View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19132_high_12 (Length: 285)
Name: NF19132_high_12
Description: NF19132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19132_high_12 |
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| [»] scaffold0134 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 54290908 - 54290639
Alignment:
| Q |
1 |
caagagactcgattgactcaaccggactacgaggaatgaccgtaaatttgtgggtagctgggttccacaatacatgtttgtcatcaacacaacattcatg |
100 |
Q |
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| T |
54290908 |
caagagactcgattgactcaaccggactatgaggaatgaccgtaaatttgtgggtagctgggttccacaatacatgtttgtcatcaacacaacattcatg |
54290809 |
T |
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| Q |
101 |
gagacacaatgtgccattaaggctaccatgaccaaaaataggaaaataggcatcgtgtttaaatggatttgaccaatctaatttcactttattctcaaac |
200 |
Q |
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| T |
54290808 |
gagacacagtgtgccattaaggctaccatgaccaaaaataggaaaataggcatcgtgtgtaaatggatttgaccaatctaatttgactttattctcaaac |
54290709 |
T |
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| Q |
201 |
ctttcgccagaaagaaaatatagaacttctttattaggggttcagccaagtttaagagtagagatggttg |
270 |
Q |
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| T |
54290708 |
cttttgccagaaagaaaatatagaacttctttattaggggttcagccaagtataagagtagagatggttg |
54290639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 37895459 - 37895402
Alignment:
| Q |
16 |
actcaaccggactacgaggaatgaccgtaaatttgtgggtagctgggttccacaatac |
73 |
Q |
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| T |
37895459 |
actcaaccggactatgaggaatgaccttgaatttgttggtagctgggttccataatac |
37895402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 20426133 - 20426074
Alignment:
| Q |
15 |
gactcaaccggactacgaggaatgaccgtaaatttgtgggtagctgggttccacaataca |
74 |
Q |
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| T |
20426133 |
gactcagccggactaggaggaatgaccttagattcatgggtagctgggttccacaataca |
20426074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 202
Target Start/End: Complemental strand, 37895189 - 37895147
Alignment:
| Q |
160 |
taaatggatttgaccaatctaatttcactttattctcaaacct |
202 |
Q |
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| T |
37895189 |
taaatggatttaaccaatctaatttgactttattcacaaacct |
37895147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 15632067 - 15632114
Alignment:
| Q |
173 |
ccaatctaatttcactttattctcaaacctttcgccagaaagaaaata |
220 |
Q |
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| T |
15632067 |
ccaatctaatttaactctactctcaaacctttcaccagaaagaaaata |
15632114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 42445676 - 42445610
Alignment:
| Q |
163 |
atggatttgaccaatctaatttcactttattctcaaacctttcgccagaaagaaaatatagaacttc |
229 |
Q |
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| T |
42445676 |
atggatttgagtaatctaatttgaccttattctcgaacctctgaccagaaagaaaatataaaacttc |
42445610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 16960 - 17017
Alignment:
| Q |
163 |
atggatttgaccaatctaatttcactttattctcaaacctttcgccagaaagaaaata |
220 |
Q |
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| T |
16960 |
atggatttgagaaatctaatttgaccttattctcaaacctctcaccagaaagagaata |
17017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 29136767 - 29136731
Alignment:
| Q |
45 |
aatttgtgggtagctgggttccacaatacatgtttgt |
81 |
Q |
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| T |
29136767 |
aatttctgggtagctgggttccataatacatgtttgt |
29136731 |
T |
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