View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19132_high_14 (Length: 208)
Name: NF19132_high_14
Description: NF19132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19132_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 41 - 192
Target Start/End: Complemental strand, 30154611 - 30154460
Alignment:
| Q |
41 |
ctatcataagagtctatctttgctagaagaagttgttacaatccaatgtactgcagcaagtaatgtcatgagtcacttggatgaaagacatctagaaaaa |
140 |
Q |
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| T |
30154611 |
ctatcataagagtctatctttgctagaagaagttgttacaatccaatgtactgcagcaagtaatggcatgagtcacttggatgaaagacatctagaaaaa |
30154512 |
T |
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| Q |
141 |
ataataaaacatttagatttttcattcaattacacctctcttgttaagatgt |
192 |
Q |
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| T |
30154511 |
ataataaaacatttagatttttcattcaattacacctctcttgttaagatgt |
30154460 |
T |
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Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 41 - 192
Target Start/End: Original strand, 20818555 - 20818705
Alignment:
| Q |
41 |
ctatcataagagtctatctttgctagaagaagttgttacaatccaatgtactgcagcaagtaatgtcatgagtcacttggatgaaagacatctagaaaaa |
140 |
Q |
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||||||||| | ||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
20818555 |
ctatcataataatctatctttactagaagaagttgttacgatccaatgtactgcag-aagtaatgtcatgagtcatttggatgaaagacatctagaaaaa |
20818653 |
T |
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| Q |
141 |
ataataaaacatttagatttttcattcaattacacctctcttgttaagatgt |
192 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
20818654 |
ataataaattgtttagatttttcattcaattacacttctcttgttaagatgt |
20818705 |
T |
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