View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19132_high_4 (Length: 476)
Name: NF19132_high_4
Description: NF19132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19132_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 162; Significance: 3e-86; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 66 - 281
Target Start/End: Complemental strand, 38934793 - 38934578
Alignment:
| Q |
66 |
cattagcgtggatagatgaataatgtcgagttttgagcaaaatatatagttttcatttttatacacaataaaacaaaatgggctgtattgctnnnnnnnn |
165 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
38934793 |
cattagcgtggatagatgagtaatgtcgagttttgagcaaaatatatagttttcatttttatatacaataaaacaaaatgg-ctgtattgctaaaaaaaa |
38934695 |
T |
|
| Q |
166 |
n-ggctgtataatttctatgaaattcatgcatataaattcaatgttaccatactcacttaatcaccattaagctatctattgtttaatttcttgttgatt |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38934694 |
aaggctgtataatttctatgaaattcatgcatataaattcaatgttaccatacccacttaatcaccattaagctatctattgtttaatttcttgttgatt |
38934595 |
T |
|
| Q |
265 |
cataatttagatagtag |
281 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
38934594 |
cataatttagatagtag |
38934578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 282 - 449
Target Start/End: Complemental strand, 38934534 - 38934369
Alignment:
| Q |
282 |
ctagtactagttttcagattacaacttctatactatccctatttaatcttatcatcattgttggagtcaatatagctaatcaattagacaaattacttgc |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38934534 |
ctagtactagttttcagattacaacttcta--ctatccttatttaatcttatcatcattgttggagtaaatatagctaatcaattagacaaattacttgc |
38934437 |
T |
|
| Q |
382 |
taataatgttttgccacgactcatgaatattagcactaaaagatgtctcattatgaatcaaatcaaat |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38934436 |
taataatgttttgccacgactcatgaatattagcactaaaagatgtctcattatgaatcgaatcaaat |
38934369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 38934872 - 38934816
Alignment:
| Q |
12 |
gaagaatataattatctatgttgattgaaaatataaataataaaactcaaatctcat |
68 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38934872 |
gaagaatataattatctatgttgattgaaaatataaataataaaactcaaatctcat |
38934816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University