View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19132_low_1 (Length: 822)

Name: NF19132_low_1
Description: NF19132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19132_low_1
NF19132_low_1
[»] chr3 (12 HSPs)
chr3 (447-807)||(2850240-2850601)
chr3 (141-415)||(2849938-2850216)
chr3 (24-140)||(7688425-7688541)
chr3 (19-140)||(5705065-5705186)
chr3 (19-141)||(28104392-28104515)
chr3 (19-141)||(28058008-28058131)
chr3 (19-141)||(28068433-28068556)
chr3 (664-804)||(27814930-27815070)
chr3 (34-140)||(19435605-19435710)
chr3 (670-730)||(7161295-7161355)
chr3 (664-713)||(48446500-48446549)
chr3 (664-730)||(14349627-14349693)
[»] chr1 (11 HSPs)
chr1 (19-140)||(16104778-16104899)
chr1 (7-140)||(19656889-19657022)
chr1 (19-140)||(16101322-16101443)
chr1 (19-140)||(14650847-14650969)
chr1 (19-140)||(14654847-14654969)
chr1 (19-140)||(14660638-14660760)
chr1 (19-140)||(17478215-17478336)
chr1 (26-140)||(29287704-29287817)
chr1 (72-140)||(17652807-17652875)
chr1 (69-140)||(47050059-47050130)
chr1 (664-713)||(43099399-43099448)
[»] chr2 (6 HSPs)
chr2 (19-140)||(10416520-10416641)
chr2 (7-140)||(4698464-4698597)
chr2 (32-140)||(808177-808285)
chr2 (34-140)||(2588428-2588533)
chr2 (72-140)||(44324742-44324810)
chr2 (70-118)||(45333308-45333356)
[»] chr6 (9 HSPs)
chr6 (19-140)||(33063689-33063810)
chr6 (18-128)||(30130915-30131025)
chr6 (19-140)||(27527824-27527946)
chr6 (6-140)||(33056197-33056334)
chr6 (26-131)||(15969961-15970066)
chr6 (35-140)||(28041304-28041408)
chr6 (72-140)||(22014634-22014702)
chr6 (20-137)||(6952786-6952903)
chr6 (69-140)||(25477665-25477735)
[»] chr7 (5 HSPs)
chr7 (19-140)||(28804133-28804254)
chr7 (19-140)||(26525371-26525492)
chr7 (664-802)||(39438403-39438541)
chr7 (664-730)||(39425372-39425438)
chr7 (664-709)||(47367643-47367688)
[»] chr4 (5 HSPs)
chr4 (23-140)||(5358103-5358221)
chr4 (20-137)||(30873893-30874010)
chr4 (34-140)||(27560628-27560733)
chr4 (46-142)||(51534234-51534329)
chr4 (46-140)||(18693730-18693823)
[»] chr8 (3 HSPs)
chr8 (19-140)||(28602614-28602735)
chr8 (30-141)||(15925525-15925636)
chr8 (32-140)||(4706151-4706259)
[»] scaffold0713 (1 HSPs)
scaffold0713 (19-118)||(1289-1388)
[»] chr5 (4 HSPs)
chr5 (19-140)||(5518975-5519096)
chr5 (32-140)||(42786077-42786185)
chr5 (19-140)||(27197780-27197902)
chr5 (20-138)||(15599416-15599535)
[»] scaffold0002 (4 HSPs)
scaffold0002 (48-140)||(10306-10398)
scaffold0002 (19-138)||(406455-406574)
scaffold0002 (19-63)||(412530-412574)
scaffold0002 (19-138)||(423827-423945)
[»] scaffold0014 (1 HSPs)
scaffold0014 (19-140)||(115263-115384)
[»] scaffold0012 (1 HSPs)
scaffold0012 (20-141)||(233053-233174)
[»] scaffold0654 (2 HSPs)
scaffold0654 (21-140)||(3958-4077)
scaffold0654 (21-140)||(5310-5431)
[»] scaffold0406 (1 HSPs)
scaffold0406 (40-140)||(4129-4227)
[»] scaffold0007 (1 HSPs)
scaffold0007 (72-118)||(61210-61256)


Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 447 - 807
Target Start/End: Original strand, 2850240 - 2850601
Alignment:
Q  447 acaatcagaaaaaacgtgtttctgtgtgacaaacctataaaaataaaa-gcaatccttaactaaaatagaaaacaatcatcaatgagataataatttaaa 545  Q
    ||||||||||||||||||||||| |||||||||  ||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  2850240 acaatcagaaaaaacgtgtttctatgtgacaaatttataaaaataaaaagcaatccgtaactaaaatagaaaactatcatcaatgagataataatttaaa 2850339  T
Q  546 gaaagtagagaggatctagaatgtatatttgcaaaactttgccataaacgacaaaaatgaaacaaagttcatgtctttcaaatcatcaaatcctactatt 645  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2850340 gaaagtagagaggatctagaatgtatatttgcaaaactttgccataaacgacaaaaatgaaacaaagttcatgtctttcaaatcatcaaatcctactatt 2850439  T
Q  646 acatatttagaatcaacaaaataaaagtttacatgttgtagagcccattgtggatgaagataatttcattaacatttggttctttgcatatctttttgcg 745  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2850440 acatatttagaatcaacaaaataaaagtttacatgttgtagggcccattgtggatgaagataatttcattaacatttggttctttgcatatctttttgcg 2850539  T
Q  746 aagccggtactcttaattgccatagtttgaagtacttttgaattctccataatatatgtaac 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2850540 aagccggtactcttaattgccatagtttgaagtacttttgaattctccataatatatgtaac 2850601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 141 - 415
Target Start/End: Original strand, 2849938 - 2850216
Alignment:
Q  141 ctacaggtttataaatttctgcaattctaaccgtaccgatcagcacaaaggaaagcaaaaatctgcagcatgcaaaactacaaacccagacagaaaccaa 240  Q
    |||||||||||||||||||| ||||||||||| || | |||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  2849938 ctacaggtttataaatttctccaattctaaccataac-atcagcgcaaaggaaagcaaaaatctgcagcatgcaaaacaacaaacccagagagaaaccaa 2850036  T
Q  241 aacat-----atcctactagccacaattttgagaagtaaaaagtgacaaaattctaaaagctaccagttaagttgttcttccattatgtcaatctagatt 335  Q
    |||||     ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2850037 aacatgaaatatcctactagcaacaattttgagaagtaaaaagtgacaaaattctaaaagctaccagttaagttcttcttccattatgtcaatctagatt 2850136  T
Q  336 ctactactgtagtccatgtagttgcaaattatgatatccattatgcaatattgttaagttgattttatgtcatatttgat 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2850137 ctactactgtagtccatgtagttgcaaattatgatatccattatgcaatattgttaagttgattttatgtcatatttgat 2850216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 7688541 - 7688425
Alignment:
Q  24 gaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattg 123  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7688541 gaaagtcaatttgaaaattgtttaaattatagtttgtcaagggtcgtcaataggcttgccggactaggatgctctagttcgtgcgccggtcacgaaattg 7688442  T
Q  124 aattttgggtcgtgaca 140  Q
    |||||| ||||||||||    
T  7688441 aattttaggtcgtgaca 7688425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 5705186 - 5705065
Alignment:
Q  19 taagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga 118  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   ||||||| | |||||||||||    
T  5705186 taagtgaaagtcagtttgaaaattgtttaaattatagtttgtcaagggtcgtcaataggcttgccggactaggatgtcttagttcgagcgccggtcacga 5705087  T
Q  119 aattgaattttgggtcgtgaca 140  Q
     |||||||||||||||||||||    
T  5705086 tattgaattttgggtcgtgaca 5705065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 28104392 - 28104515
Alignment:
Q  19 taagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga 118  Q
    ||||||||||||||||||||| || | ||||||||||||||||||| || |||| ||||||||||||||||||||| |||||||| || |||||||||||    
T  28104392 taagtgaaagtcaatttgaaatttatctaaattatagtttgtcaagtgtcgtcattaggcttgccggactaggatgttctagttcatgcgccggtcacga 28104491  T
Q  119 aattgaa-ttttgggtcgtgacac 141  Q
    |  |||| ||||||||||||||||    
T  28104492 atgtgaatttttgggtcgtgacac 28104515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 28058131 - 28058008
Alignment:
Q  19 taagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga 118  Q
    ||||||||||| ||||||||| || | ||||||||||||||||||  ||||| | ||||||||||||||||||||| ||||||||||| ||||||||| |    
T  28058131 taagtgaaagtaaatttgaaatttatctaaattatagtttgtcaactgttgttattaggcttgccggactaggatgttctagttcgtgcgccggtcacaa 28058032  T
Q  119 aattgaa-ttttgggtcgtgacac 141  Q
    |  |||| ||||||||||||||||    
T  28058031 atgtgaatttttgggtcgtgacac 28058008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 28068556 - 28068433
Alignment:
Q  19 taagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga 118  Q
    ||||||||||| ||||||||| || | ||||||||||||||||||  ||||| | ||||||||||||||||||||| ||||||||||| ||||||||| |    
T  28068556 taagtgaaagtaaatttgaaatttatctaaattatagtttgtcaactgttgttattaggcttgccggactaggatgttctagttcgtgcgccggtcacaa 28068457  T
Q  119 aattgaa-ttttgggtcgtgacac 141  Q
    |  |||| ||||||||||||||||    
T  28068456 atgtgaatttttgggtcgtgacac 28068433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 664 - 804
Target Start/End: Original strand, 27814930 - 27815070
Alignment:
Q  664 aaataaaagtttacatgttgtagagcccattgtggatgaagataatttcattaacatttggttctttgcatatctttttgcgaagccggtactcttaatt 763  Q
    |||||||||||||||||||||| | ||| |||||||||||||||||| |||||||||||||| |||||||| | | |   | |||| || ||| ||||||    
T  27814930 aaataaaagtttacatgttgtaaaaccctttgtggatgaagataattccattaacatttggtgctttgcatttatatccactaagcaggaacttttaatt 27815029  T
Q  764 gccatagtttgaagtacttttgaattctccataatatatgt 804  Q
    | ||| || || |||||||||||||||| ||||||||||||    
T  27815030 gtcatcgtctgcagtacttttgaattctgcataatatatgt 27815070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 34 - 140
Target Start/End: Original strand, 19435605 - 19435710
Alignment:
Q  34 ttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggt 133  Q
    |||||||||||||||||||||||| |||||| || |||||||| |||| |||| ||| ||| ||||||||||| |||||||||||   ||||||||||||    
T  19435605 ttgaaaattgtttaaattatagtt-gtcaagtgtcgtcaatagacttgtcggattagaatgttctagttcgtgcgccggtcacgattgtgaattttgggt 19435703  T
Q  134 cgtgaca 140  Q
    |||||||    
T  19435704 cgtgaca 19435710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 670 - 730
Target Start/End: Original strand, 7161295 - 7161355
Alignment:
Q  670 aagtttacatgttgtagagcccattgtggatgaagataatttcattaacatttggttcttt 730  Q
    |||||||||||||||||| ||| ||||| |||||||| |||||| ||||||||||||||||    
T  7161295 aagtttacatgttgtagatccccttgtgcatgaagatgatttcagtaacatttggttcttt 7161355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 664 - 713
Target Start/End: Complemental strand, 48446549 - 48446500
Alignment:
Q  664 aaataaaagtttacatgttgtagagcccattgtggatgaagataatttca 713  Q
    ||||| |||||||||||||||||||||| ||||| |||||||||||||||    
T  48446549 aaatagaagtttacatgttgtagagccccttgtgcatgaagataatttca 48446500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 664 - 730
Target Start/End: Original strand, 14349627 - 14349693
Alignment:
Q  664 aaataaaagtttacatgttgtagagcccattgtggatgaagataatttcattaacatttggttcttt 730  Q
    |||||||||||||||||||||||||||| ||| | ||||||||| |||||   ||||||||| ||||    
T  14349627 aaataaaagtttacatgttgtagagccccttgagcatgaagatagtttcagcgacatttggtacttt 14349693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 1e-52; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 16104778 - 16104899
Alignment:
Q  19 taagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16104778 taagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtagtcaataggcttgccggactaggatgctctagttcgtgcgccggtcacga 16104877  T
Q  119 aattgaattttgggtcgtgaca 140  Q
     |||||||||||||||||||||    
T  16104878 tattgaattttgggtcgtgaca 16104899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 19657022 - 19656889
Alignment:
Q  7 tggacatcatcataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtg 106  Q
    |||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19657022 tggatatcattataagtgaaagtaaatttgaaaattgtttaaattatagtttgtcaaggattgtcaataggcttgccggactaggatgctctagttcgtg 19656923  T
Q  107 tgccggtcacgaaattgaattttgggtcgtgaca 140  Q
     ||||||||||| ||||||| |||||||||||||    
T  19656922 cgccggtcacgatattgaatcttgggtcgtgaca 19656889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 16101322 - 16101443
Alignment:
Q  19 taagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga 118  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16101322 taagtgaaagtcaacttgaaaattgtttaaattatagtttgtcaagtgtagtcaataggcttgccggactaggatgctctagttcgtgcgccggtcacga 16101421  T
Q  119 aattgaattttgggtcgtgaca 140  Q
     |||||||||||||||||||||    
T  16101422 tattgaattttgggtcgtgaca 16101443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 14650847 - 14650969
Alignment:
Q  19 taagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga 118  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||| |||||||||||    
T  14650847 taagtgaaagtcaatttgaaaattatttaaattatagtttgtcaagtgttgtcattaggcttgccggactaggatgttctagttcgtgcgccggtcacga 14650946  T
Q  119 aattgaa-ttttgggtcgtgaca 140  Q
       |||| |||||||||||||||    
T  14650947 ttgtgaatttttgggtcgtgaca 14650969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 14654847 - 14654969
Alignment:
Q  19 taagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga 118  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||| |||||||||||    
T  14654847 taagtgaaagtcaatttgaaaattatttaaattatagtttgtcaagtgttgtcattaggcttgccggactaggatgttctagttcgtgcgccggtcacga 14654946  T
Q  119 aattgaa-ttttgggtcgtgaca 140  Q
       |||| |||||||||||||||    
T  14654947 ttgtgaatttttgggtcgtgaca 14654969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 14660638 - 14660760
Alignment:
Q  19 taagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga 118  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||| |||||||||||    
T  14660638 taagtgaaagtcaatttgaaaattatttaaattatagtttgtcaagtgttgtcattaggcttgccggactaggatgttctagttcgtgcgccggtcacga 14660737  T
Q  119 aattgaa-ttttgggtcgtgaca 140  Q
       |||| |||||||||||||||    
T  14660738 ttgtgaatttttgggtcgtgaca 14660760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 17478336 - 17478215
Alignment:
Q  19 taagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga 118  Q
    |||||||||||||||||| ||| ||||| ||||||||||||||||| ||||||||| ||||||||| ||||||||| ||||||||||| |||||||||||    
T  17478336 taagtgaaagtcaatttggaaaatgtttgaattatagtttgtcaagtgttgtcaattggcttgccgaactaggatgttctagttcgtgcgccggtcacga 17478237  T
Q  119 aattgaattttgggtcgtgaca 140  Q
       |||||||||||||||||||    
T  17478236 ttgtgaattttgggtcgtgaca 17478215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 29287817 - 29287704
Alignment:
Q  26 aagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaa 125  Q
    ||||||| |||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||| ||||||||||| |||||||||||   ||||    
T  29287817 aagtcaaattgaaaattgtttaaattatagtt-gtcaagtgtcgtcaataggcttgccggactaggatgttctagttcgtgcgccggtcacgatcgtgaa 29287719  T
Q  126 ttttgggtcgtgaca 140  Q
    |||||||||||||||    
T  29287718 ttttgggtcgtgaca 29287704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 72 - 140
Target Start/End: Complemental strand, 17652875 - 17652807
Alignment:
Q  72 aataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggtcgtgaca 140  Q
    |||||||||||||| |||| ||| ||||||||||| ||||||||||| |||||||||||||||||||||    
T  17652875 aataggcttgccgggctagaatgatctagttcgtgcgccggtcacgatattgaattttgggtcgtgaca 17652807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 140
Target Start/End: Complemental strand, 47050130 - 47050059
Alignment:
Q  69 gtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggtcgtgaca 140  Q
    ||||||| ||||| |||||||||||| ||||||| ||| ||| ||||||    |||||||||||||||||||    
T  47050130 gtcaatatgcttgtcggactaggatgttctagtttgtgcgccagtcacggttgtgaattttgggtcgtgaca 47050059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 664 - 713
Target Start/End: Complemental strand, 43099448 - 43099399
Alignment:
Q  664 aaataaaagtttacatgttgtagagcccattgtggatgaagataatttca 713  Q
    ||||||||| |||||||||||||||||| ||||  |||| ||||||||||    
T  43099448 aaataaaagcttacatgttgtagagccccttgtacatgatgataatttca 43099399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 3e-50; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 10416520 - 10416641
Alignment:
Q  19 taagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga 118  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10416520 taagtgaaagtcaatttgaaaattgtttaaattgtagtttgtcaagtgtcgtcaataggcttgccggactaggatgctctagttcgtgcgccggtcacga 10416619  T
Q  119 aattgaattttgggtcgtgaca 140  Q
     |||||||||||||||||||||    
T  10416620 tattgaattttgggtcgtgaca 10416641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 4698464 - 4698597
Alignment:
Q  7 tggacatcatcataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtg 106  Q
    |||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||| ||    
T  4698464 tggatatcattacaagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggtcgttaatagacttgccggactaggatgttctagttcatg 4698563  T
Q  107 tgccggtcacgaaattgaattttgggtcgtgaca 140  Q
     |||||||||||||||||||||||||||||||||    
T  4698564 cgccggtcacgaaattgaattttgggtcgtgaca 4698597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 808285 - 808177
Alignment:
Q  32 atttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgg 131  Q
    |||| |||||||||||||||||||||||| ||| || |||||||||||||||||||||||||| ||||||||||| |||||||||||   ||||||||||    
T  808285 atttaaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccggactaggatgttctagttcgtgcgccggtcacgattgtgaattttgg 808186  T
Q  132 gtcgtgaca 140  Q
    |||||||||    
T  808185 gtcgtgaca 808177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 34 - 140
Target Start/End: Original strand, 2588428 - 2588533
Alignment:
Q  34 ttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggt 133  Q
    |||||||||||||||| ||||||| | |||| || |||||||||||||||||||||||||| ||||||||||| |||| ||||||   ||||||||||||    
T  2588428 ttgaaaattgtttaaactatagtt-gccaagtgtcgtcaataggcttgccggactaggatgttctagttcgtgcgccgttcacgattgtgaattttgggt 2588526  T
Q  134 cgtgaca 140  Q
    |||||||    
T  2588527 cgtgaca 2588533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 44324742 - 44324810
Alignment:
Q  72 aataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggtcgtgaca 140  Q
    |||||||||||||| |||| ||| ||||||||||| ||||||||||| |||||||||||||||||||||    
T  44324742 aataggcttgccgggctagaatgatctagttcgtgcgccggtcacgatattgaattttgggtcgtgaca 44324810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 45333308 - 45333356
Alignment:
Q  70 tcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga 118  Q
    |||||||||||||||| |||| ||| ||||||||||| |||||||||||    
T  45333308 tcaataggcttgccgggctagaatgttctagttcgtgcgccggtcacga 45333356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 2e-45; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 33063689 - 33063810
Alignment:
Q  19 taagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||  |||||||| ||    
T  33063689 taagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcaataggcttgccggactagggtgctctagttcgtacgccggtcatga 33063788  T
Q  119 aattgaattttgggtcgtgaca 140  Q
     |||||||||||||||||||||    
T  33063789 tattgaattttgggtcgtgaca 33063810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 30130915 - 30131025
Alignment:
Q  18 ataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||| |||| |||||    
T  30130915 ataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggtcgtcaataggctttccggactaggaagctctagttcgtgcgccgatcacg 30131014  T
Q  118 aaattgaattt 128  Q
    |||||||||||    
T  30131015 aaattgaattt 30131025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 27527824 - 27527946
Alignment:
Q  19 taagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga 118  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||| | |||||||||    
T  27527824 taagtgaaagtcaatttgaaaattatttaaattatagtttgtcaagtgttgtcattaggcttgccggactaggatgttctagttcgtgcgtcggtcacga 27527923  T
Q  119 aattgaa-ttttgggtcgtgaca 140  Q
       |||| |||||||||||||||    
T  27527924 ttgtgaatttttgggtcgtgaca 27527946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 6 - 140
Target Start/End: Original strand, 33056197 - 33056334
Alignment:
Q  6 atggacatcatcataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtc---aataggcttgccggactaggatgctctagtt 102  Q
    ||||| |||||  ||||||||||||||||| |||||||||||||||||||||||||||| || |||   ||||||||| |||||||||| | ||||||||    
T  33056197 atggatatcattttaagtgaaagtcaatttaaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttaccggactagggtactctagtt 33056296  T
Q  103 cgtgtgccggtcacgaaattgaattttgggtcgtgaca 140  Q
    |||| ||||||||||| ||||||||||||||| |||||    
T  33056297 cgtgcgccggtcacgatattgaattttgggtcttgaca 33056334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 26 - 131
Target Start/End: Complemental strand, 15970066 - 15969961
Alignment:
Q  26 aagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaa 125  Q
    ||||||||||||||||||||||||||||||||||||||| || |||| ||| |||||||| ||| |||| |||| |||||| |||||||||||   ||||    
T  15970066 aagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcattagacttgccgggctacgatgttctatttcgtgcgccggtcacgattgtgaa 15969967  T
Q  126 ttttgg 131  Q
    ||||||    
T  15969966 ttttgg 15969961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 35 - 140
Target Start/End: Original strand, 28041304 - 28041408
Alignment:
Q  35 tgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggtc 134  Q
    ||||||||||||||||||||||| | |||| || ||||||| |||| ||| ||||||||| ||||||||||| |||||||||||   |||||||||||||    
T  28041304 tgaaaattgtttaaattatagtt-gccaagtgtcgtcaataagcttaccgaactaggatgttctagttcgtgcgccggtcacgattgtgaattttgggtc 28041402  T
Q  135 gtgaca 140  Q
    ||||||    
T  28041403 gtgaca 28041408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 22014634 - 22014702
Alignment:
Q  72 aataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggtcgtgaca 140  Q
    |||||||||||||| |||| ||| ||||||||||| ||||||||||| |||||||||||||||||||||    
T  22014634 aataggcttgccgggctagaatgatctagttcgtgcgccggtcacgatattgaattttgggtcgtgaca 22014702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 6952786 - 6952903
Alignment:
Q  20 aagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaa 119  Q
    |||||||||| ||||| ||||||||||||||||||||||| |||| || ||||||| ||||| |  |||||| || ||||||| |||  ||||||| ||     
T  6952786 aagtgaaagttaatttaaaaattgtttaaattatagtttgccaagtgtcgtcaataagcttgtcatactaggttgttctagtttgtgcaccggtcaggat 6952885  T
Q  120 attgaattttgggtcgtg 137  Q
     || ||||||||||||||    
T  6952886 tttaaattttgggtcgtg 6952903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 140
Target Start/End: Complemental strand, 25477735 - 25477665
Alignment:
Q  69 gtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggtcgtgaca 140  Q
    |||||||||||||||||||||||||| ||||||||||| |||||| ||||   |||| ||||||||||||||    
T  25477735 gtcaataggcttgccggactaggatgttctagttcgtgcgccggttacgattgtgaa-tttgggtcgtgaca 25477665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 3e-38; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 28804133 - 28804254
Alignment:
Q  19 taagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga 118  Q
    |||||||||  |||||| |||||||||||||||||||||||||||| ||  ||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  28804133 taagtgaaaaacaatttaaaaattgtttaaattatagtttgtcaagtgtcatcaatagacttgccggactaggatgctctagttcgtgcgccggtcacga 28804232  T
Q  119 aattgaattttgggtcgtgaca 140  Q
     ||| |||||||||||||||||    
T  28804233 tattaaattttgggtcgtgaca 28804254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 26525371 - 26525492
Alignment:
Q  19 taagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga 118  Q
    |||||| ||||||| ||||||| | || |||||||||||||||||| || |||||||| |||| ||| |||| | | ||||||||||| |||||||||||    
T  26525371 taagtggaagtcaaattgaaaaattttcaaattatagtttgtcaagtgtcgtcaatagacttgtcgggctagaaagttctagttcgtgcgccggtcacga 26525470  T
Q  119 aattgaattttgggtcgtgaca 140  Q
     |||||||||| ||||||||||    
T  26525471 tattgaatttttggtcgtgaca 26525492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 664 - 802
Target Start/End: Complemental strand, 39438541 - 39438403
Alignment:
Q  664 aaataaaagtttacatgttgtagagcccattgtggatgaagataatttcattaacatttggttctttgcatatctttttgcgaagccggtactcttaatt 763  Q
    |||||||||||||||||| ||||||||  ||||  ||||||||| ||||||||||| ||||| |||  |||   | | |  | | |  ||||| ||||||    
T  39438541 aaataaaagtttacatgtcgtagagcctcttgtatatgaagatagtttcattaacaattggtacttcacattcatatctagggaacgtgtactattaatt 39438442  T
Q  764 gccatagtttgaagtacttttgaattctccataatatat 802  Q
    | ||||||||  |||||||||||||||||||||||||||    
T  39438441 gtcatagtttctagtacttttgaattctccataatatat 39438403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 664 - 730
Target Start/End: Complemental strand, 39425438 - 39425372
Alignment:
Q  664 aaataaaagtttacatgttgtagagcccattgtggatgaagataatttcattaacatttggttcttt 730  Q
    |||||||||||| ||||||||||||||  |||||  |||||||||||||  ||||| ||||| ||||    
T  39425438 aaataaaagtttgcatgttgtagagcctcttgtgcttgaagataatttcgctaacaattggtacttt 39425372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 664 - 709
Target Start/End: Original strand, 47367643 - 47367688
Alignment:
Q  664 aaataaaagtttacatgttgtagagcccattgtggatgaagataat 709  Q
    |||||||||||||||  ||| ||||||| |||||||||||||||||    
T  47367643 aaataaaagtttacaatttggagagccccttgtggatgaagataat 47367688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 2e-36; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 23 - 140
Target Start/End: Complemental strand, 5358221 - 5358103
Alignment:
Q  23 tgaaagtcaa-tttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaat 121  Q
    |||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| |||||||||||  |    
T  5358221 tgaaagtcaaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcaataggcttgccggactaggatgttctagttcgtgcgccggtcacgattt 5358122  T
Q  122 tgaattttgggtcgtgaca 140  Q
    |  ||||||||||||||||    
T  5358121 tagattttgggtcgtgaca 5358103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 30874010 - 30873893
Alignment:
Q  20 aagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaa 119  Q
    ||||||| |||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||| |||| ||||||| ||| |||||||||||     
T  30874010 aagtgaaggtcaatttaaaaattgtttaaattatagtttgtcaagtgtcgtcaataggcttgccggactaagatgttctagtttgtgcgccggtcacgat 30873911  T
Q  120 attgaattttgggtcgtg 137  Q
     |||||||||||| ||||    
T  30873910 tttgaattttgggccgtg 30873893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 34 - 140
Target Start/End: Complemental strand, 27560733 - 27560628
Alignment:
Q  34 ttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggt 133  Q
    |||||||||||||||||||||||| | |||| || |||||||||||||||| ||||||||| ||||||||||| |||||||||||   ||||||||||||    
T  27560733 ttgaaaattgtttaaattatagtt-gccaagtgtcgtcaataggcttgccgaactaggatgttctagttcgtgcgccggtcacgattgtgaattttgggt 27560635  T
Q  134 cgtgaca 140  Q
    | |||||    
T  27560634 cctgaca 27560628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 46 - 142
Target Start/End: Original strand, 51534234 - 51534329
Alignment:
Q  46 taaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggtcgtgacact 142  Q
    |||||||||||| |||||| || |||||||||||||||||||||| ||| ||||||||||| |||||||||||   |||||||||||||||||||||    
T  51534234 taaattatagtt-gtcaagtgtggtcaataggcttgccggactagaatgttctagttcgtgcgccggtcacgattgtgaattttgggtcgtgacact 51534329  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 46 - 140
Target Start/End: Complemental strand, 18693823 - 18693730
Alignment:
Q  46 taaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggtcgtgaca 140  Q
    |||||||||||| |||| | || |||||||||||||||||||||| ||| ||||||||||| |||||||||||   |||||||||||||||||||    
T  18693823 taaattatagtt-gtcatgtgtcgtcaataggcttgccggactagaatgttctagttcgtgcgccggtcacgattgtgaattttgggtcgtgaca 18693730  T

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Target: chr8 (Bit Score: 74; Significance: 2e-33; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 28602735 - 28602614
Alignment:
Q  19 taagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga 118  Q
    ||||||||  || ||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| |||| |||||| |||||||||||    
T  28602735 taagtgaatttcgatttgaaaattgtttaaattatagtttgtcaagtgtcgttaataggcttgccggactaggatgttctaattcgtgcgccggtcacga 28602636  T
Q  119 aattgaattttgggtcgtgaca 140  Q
       |||||||||||||||||||    
T  28602635 ttgtgaattttgggtcgtgaca 28602614  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 15925525 - 15925636
Alignment:
Q  30 caatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaatttt 129  Q
    |||||||||||||||||||||||||| || ||||| |   |||||||||||| ||||||||||||||||| || ||| ||||||||||| ||| ||||||    
T  15925525 caatttgaaaattgtttaaattataggttatcaagtgccatcaataggcttgacggactaggatgctctaatttgtgcgccggtcacgatattaaatttt 15925624  T
Q  130 gggtcgtgacac 141  Q
    ||||||||||||    
T  15925625 gggtcgtgacac 15925636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 4706259 - 4706151
Alignment:
Q  32 atttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgg 131  Q
    |||| |||||||||||||||||||||||| ||| || |||||  ||||||||||||||||||| ||||||| ||| |||||||||||   ||||||||||    
T  4706259 atttaaaaattgtttaaattatagtttgttaagtgtcgtcaacgggcttgccggactaggatgttctagtttgtgcgccggtcacgattgtgaattttgg 4706160  T
Q  132 gtcgtgaca 140  Q
    |||||||||    
T  4706159 gtcgtgaca 4706151  T

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Target: scaffold0713 (Bit Score: 72; Significance: 3e-32; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 1289 - 1388
Alignment:
Q  19 taagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga 118  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| ||||||||||||| ||||||||||| |||||||||||    
T  1289 taagtgtaagtcaatttgaaaattatttaaattatagtttgtcaagtgttgtcattaggctttccggactaggatgttctagttcgtgcgccggtcacga 1388  T

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Target: chr5 (Bit Score: 70; Significance: 4e-31; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 5519096 - 5518975
Alignment:
Q  19 taagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga 118  Q
    ||||||||  || |||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||| |||| ||||||||||| |||||||||||    
T  5519096 taagtgaatttcgatttaaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccggactatgatgttctagttcgtgcgccggtcacga 5518997  T
Q  119 aattgaattttgggtcgtgaca 140  Q
       |||||||||||||||||||    
T  5518996 ttgtgaattttgggtcgtgaca 5518975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 42786077 - 42786185
Alignment:
Q  32 atttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgg 131  Q
    |||| |||||||||||||||||||||||| ||| || |||||||||||||||||||||||||| ||||||||||| |||||||||||   | ||||||||    
T  42786077 atttaaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccggactaggatgttctagttcgtgcgccggtcacgattataaattttgg 42786176  T
Q  132 gtcgtgaca 140  Q
    |||||||||    
T  42786177 gtcgtgaca 42786185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 27197902 - 27197780
Alignment:
Q  19 taagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga 118  Q
    ||||||||||||||||| |||||| |||| |||||||||||||||| ||||||| ||| ||||||| ||||||||| ||||||||||| |||| ||||||    
T  27197902 taagtgaaagtcaatttaaaaattatttatattatagtttgtcaagtgttgtcattagacttgccgaactaggatgttctagttcgtgcgccgatcacga 27197803  T
Q  119 aattgaa-ttttgggtcgtgaca 140  Q
       |||| |||||||||||||||    
T  27197802 ttgtgaatttttgggtcgtgaca 27197780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 138
Target Start/End: Original strand, 15599416 - 15599535
Alignment:
Q  20 aagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaa 119  Q
    |||||||| |||| ||| |||| || |||||| | |  ||||||| || |||||||||||||||| ||||||||| ||||||||||| | | |||||||     
T  15599416 aagtgaaattcaaattggaaatagtctaaatttttgcgtgtcaagtgtcgtcaataggcttgccgaactaggatgttctagttcgtgcgtccgtcacgat 15599515  T
Q  120 attga-attttgggtcgtga 138  Q
     ||||  |||||||||||||    
T  15599516 tttgagtttttgggtcgtga 15599535  T

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Target: scaffold0002 (Bit Score: 69; Significance: 2e-30; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 10306 - 10398
Alignment:
Q  48 aattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggtcgtgaca 140  Q
    ||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||    
T  10306 aattatagtttgtcaagtgtcatcaataggcttgccggactaggatgctctagttcgtgcgccggtcacgatattaaattttgggtcgtgaca 10398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 406574 - 406455
Alignment:
Q  19 taagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga 118  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||  | ||||||||| ||  | ||| |||||| ||||||||||| |||| ||||||    
T  406574 taagtgaaagtcaatttaaaaattatttaaattatagtttgtcaagtttcgtcaataggttttactgacaaggatgttctagttcgtgcgccgatcacga 406475  T
Q  119 aattgaattttgggtcgtga 138  Q
      ||||||||||||||||||    
T  406474 ttttgaattttgggtcgtga 406455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 412574 - 412530
Alignment:
Q  19 taagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaa 63  Q
    ||||||||||||||||| |||||| ||||||||||||||| ||||    
T  412574 taagtgaaagtcaatttaaaaattatttaaattatagtttctcaa 412530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 423945 - 423827
Alignment:
Q  19 taagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga 118  Q
    ||||||||| ||||||| ||||||||||||| ||||||||||||||  | ||||||||  ||  |||||||| ||| | ||||| |||  ||| |||| |    
T  423945 taagtgaaaatcaatttaaaaattgtttaaa-tatagtttgtcaagtttcgtcaatagatttttcggactagaatgttttagtttgtgcaccgatcacaa 423847  T
Q  119 aattgaattttgggtcgtga 138  Q
       |||||||||||||||||    
T  423846 ttgtgaattttgggtcgtga 423827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 115384 - 115263
Alignment:
Q  19 taagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga 118  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||| || |||||||| |||||| || ||||||  ||||||||||| |||| ||| ||    
T  115384 taagtgaaaatcaatttgaaaattgtttaaattatagtgtgtcaagtgtcgtcaatagacttgcctgattaggatattctagttcgtgcgccgatcatga 115285  T
Q  119 aattgaattttgggtcgtgaca 140  Q
       |||||||||||||||||||    
T  115284 ttgtgaattttgggtcgtgaca 115263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 233174 - 233053
Alignment:
Q  20 aagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaa 119  Q
    ||||||||||||| ||| |||| || | |||| || ||||||||| ||||||||||| ||||||| ||||||||| ||||||||||| |||||||||||     
T  233174 aagtgaaagtcaaattggaaatagtctgaattttaatttgtcaagtgttgtcaatagacttgccgaactaggatgttctagttcgtgcgccggtcacgat 233075  T
Q  120 attgaattttgggtcgtgacac 141  Q
      ||||||||||||||||||||    
T  233074 tgtgaattttgggtcgtgacac 233053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 56; Significance: 9e-23; HSPs: 2)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 4077 - 3958
Alignment:
Q  21 agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaa 120  Q
    ||||||| ||||||| |||||||||||||||||||| || |||| || || ||||| |||||| |||||||||| ||||||||||| |||| |||| |      
T  4077 agtgaaaatcaatttaaaaattgtttaaattatagtgtgccaagtgtcgttaatagacttgcctgactaggatgttctagttcgtgcgccgatcactatt 3978  T
Q  121 ttgaattttgggtcgtgaca 140  Q
     |||||||||||||||||||    
T  3977 gtgaattttgggtcgtgaca 3958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 5431 - 5310
Alignment:
Q  21 agtgaaagtcaatttgaaaattgtttaaattata--gtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga 118  Q
    ||||||| ||||||| ||||||||||||||||||  || ||||||| || |||||||| |||||| |||||||||| ||||||||||| |||| |||| |    
T  5431 agtgaaaatcaatttaaaaattgtttaaattatatagtgtgtcaagtgtcgtcaatagacttgcctgactaggatgttctagttcgtgcgccgatcacta 5332  T
Q  119 aattgaattttgggtcgtgaca 140  Q
       |||||||||||||||||||    
T  5331 ttgtgaattttgggtcgtgaca 5310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 40 - 140
Target Start/End: Original strand, 4129 - 4227
Alignment:
Q  40 attgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggtcgtgac 139  Q
    |||||||||||||||||| | |||| || |||||||||||||| ||||||||||| ||||||||||| |||||||||||   |||| |||||||||||||    
T  4129 attgtttaaattatagtt-gccaagtgtcgtcaataggcttgctggactaggatgttctagttcgtgcgccggtcacgattgtgaa-tttgggtcgtgac 4226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 61210 - 61256
Alignment:
Q  72 aataggcttgccggactaggatgctctagttcgtgtgccggtcacga 118  Q
    |||||||||||||| |||| ||| ||||||||||| |||||||||||    
T  61210 aataggcttgccgggctagaatgatctagttcgtgcgccggtcacga 61256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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