View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19132_low_10 (Length: 336)
Name: NF19132_low_10
Description: NF19132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19132_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 37 - 206
Target Start/End: Original strand, 9393865 - 9394034
Alignment:
| Q |
37 |
ctgaaagtggagtggttgaattgaattaaaatcggaaaaagatgaaacgaaaaagtttgtttttctggtaccagtatcctcaacttgaatctcataataa |
136 |
Q |
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| T |
9393865 |
ctgaaagtggagtggttgaattgaattaaaatcggaaaaagatgaaacgaaaaagtttgtttttctggtaccagtatcctcaacttgaatctcataataa |
9393964 |
T |
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| Q |
137 |
ctaacataacatattcactgggattatatattatcctctcatctaaatccaataatataaattgaaatcg |
206 |
Q |
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| T |
9393965 |
ctaacataacatattcactgggattatatattatcctctcatctaaatccaataatataaattgaaatcg |
9394034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 254 - 329
Target Start/End: Original strand, 9394082 - 9394157
Alignment:
| Q |
254 |
aatcagaaaccctaatttcatcgaacatgaagggcctcttcaagccaaagccacgtactcctactgatattcttcg |
329 |
Q |
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| T |
9394082 |
aatcagaaaccctaatttcatcgaacatgaagggcctcttcaagccaaagccacgtactcctactgatattgttcg |
9394157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 322
Target Start/End: Original strand, 30794238 - 30794281
Alignment:
| Q |
279 |
catgaagggcctcttcaagccaaagccacgtactcctactgata |
322 |
Q |
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| T |
30794238 |
catgaagggtctcttcaagccaaagccacgtgctcctactgata |
30794281 |
T |
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