View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19132_low_12 (Length: 330)

Name: NF19132_low_12
Description: NF19132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19132_low_12
NF19132_low_12
[»] chr4 (9 HSPs)
chr4 (19-169)||(9895209-9895353)
chr4 (216-318)||(9895444-9895546)
chr4 (19-169)||(11248270-11248420)
chr4 (27-151)||(11106479-11106603)
chr4 (78-151)||(11099917-11099990)
chr4 (27-151)||(11095784-11095908)
chr4 (207-263)||(11106362-11106418)
chr4 (204-245)||(9895388-9895429)
chr4 (207-263)||(11095668-11095724)
[»] chr8 (1 HSPs)
chr8 (30-152)||(13308171-13308293)
[»] chr7 (3 HSPs)
chr7 (30-154)||(18949703-18949828)
chr7 (30-154)||(19004027-19004152)
chr7 (54-154)||(18976275-18976376)
[»] chr2 (1 HSPs)
chr2 (30-156)||(15072872-15072998)


Alignment Details
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 9895209 - 9895353
Alignment:
Q  19 catagacaatggcacaagcttcaactccacatagagtgcttagttcataaaccttcttcaataaactcttctgccttttattgtatgttgtttttctaga 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||     
T  9895209 catagacaatggcacaagcttcaactccacatagagtgcttagttcataaaccttcttgaataaacccttctgccttttattgtatgttgtttttctag- 9895307  T
Q  119 agcatcattgacaatgaaagcaagtttcacctttttccgaggcattgttgt 169  Q
         ||||| ||||||||||||||||||||||||||| ||||||||||||    
T  9895308 -----cattggcaatgaaagcaagtttcacctttttccaaggcattgttgt 9895353  T

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Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 216 - 318
Target Start/End: Original strand, 9895444 - 9895546
Alignment:
Q  216 gtttttcttcttgtgaataatgtcttgttattgtttgtttatatagactaataagatatgacaaattctacggtacacccagattcaatttctagatgat 315  Q
    ||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9895444 gtttttcttgttgtcaataatgtcgtgttattgtttgtttatatagactaataagatatgacaaattctacggtacacccagattcaatttttagatgat 9895543  T
Q  316 att 318  Q
    |||    
T  9895544 att 9895546  T

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Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 11248270 - 11248420
Alignment:
Q  19 catagacaatggcacaagcttcaactccacatagagtgcttagttcataaaccttcttcaataaactcttctgccttttattgtatgttgtttttctaga 118  Q
    ||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| || || | ||  ||| ||||||||||||| ||| |||||    
T  11248270 catagactatggcacatgcttcaactccacacagagtgcttagttcataaaccttcttcagtagacccctccacctattattgtatgttgctttcctaga 11248369  T
Q  119 agcatcattgacaatgaaagcaagtttcacctttttccgaggcattgttgt 169  Q
     |||||||||||||||||||||||||||| |||||||| |  |||||||||    
T  11248370 tgcatcattgacaatgaaagcaagtttcatctttttcctacccattgttgt 11248420  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 11106603 - 11106479
Alignment:
Q  27 atggcacaagcttcaactccacatagagtgcttagttcataaaccttcttcaataaactcttctgccttttattgtatgttgtttttctagaagcatcat 126  Q
    ||||||||||| ||||  ||||| || ||||| ||||||  |||||| || |||| |||||||| |||||| || |||| || ||| |||| ||||||||    
T  11106603 atggcacaagcctcaataccacagagggtgctaagttcaacaacctttttgaatagactcttcttccttttcttatatgctgctttcctagcagcatcat 11106504  T
Q  127 tgacaatgaaagcaagtttcacctt 151  Q
    |||||||||| |||||||| |||||    
T  11106503 tgacaatgaaggcaagtttaacctt 11106479  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 11099990 - 11099917
Alignment:
Q  78 aataaactcttctgccttttattgtatgttgtttttctagaagcatcattgacaatgaaagcaagtttcacctt 151  Q
    |||| |||||||| |||||| |||||||||| ||| |||| |||||||||||||||||| |||||||| |||||    
T  11099990 aatagactcttcttccttttcttgtatgttgctttcctagcagcatcattgacaatgaaggcaagtttaacctt 11099917  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 11095908 - 11095784
Alignment:
Q  27 atggcacaagcttcaactccacatagagtgcttagttcataaaccttcttcaataaactcttctgccttttattgtatgttgtttttctagaagcatcat 126  Q
    ||||||||||| ||||  ||||| || ||||| ||||||  |||||| || || | |||||||| |||||| ||||||| || ||| || | |||||| |    
T  11095908 atggcacaagcctcaataccacagagggtgctaagttcaacaacctttttgaacagactcttcttccttttcttgtatgctgctttccttgcagcatcgt 11095809  T
Q  127 tgacaatgaaagcaagtttcacctt 151  Q
    |||||||||| |||||||| |||||    
T  11095808 tgacaatgaaggcaagtttaacctt 11095784  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 11106418 - 11106362
Alignment:
Q  207 attgttgtggtttttcttcttgtgaataatgtcttgttattgtttgtttatatagac 263  Q
    ||||||||||| |||||| ||||||||||||||| |||| | ||| |||||||||||    
T  11106418 attgttgtggtatttcttgttgtgaataatgtctcgttactttttatttatatagac 11106362  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 9895388 - 9895429
Alignment:
Q  204 tttattgttgtggtttttcttcttgtgaataatgtcttgtta 245  Q
    ||||| ||||||||||||||| |||| |||||||||||||||    
T  9895388 tttatcgttgtggtttttcttgttgtaaataatgtcttgtta 9895429  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 11095724 - 11095668
Alignment:
Q  207 attgttgtggtttttcttcttgtgaataatgtcttgttattgtttgtttatatagac 263  Q
    ||||||||||| |||||| |||||||||||||||  ||| | |||| ||||||||||    
T  11095724 attgttgtggtatttcttgttgtgaataatgtctcattactttttggttatatagac 11095668  T

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Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 30 - 152
Target Start/End: Complemental strand, 13308293 - 13308171
Alignment:
Q  30 gcacaagcttcaactccacatagagtgcttagttcataaaccttcttcaataaactcttctgccttttattgtatgttgtttttctagaagcatcattga 129  Q
    ||||||||||||| |||||| || ||||||||||| | || |||||||||||||| ||||  |||||| |||||||||  |||||| | ||| |||||||    
T  13308293 gcacaagcttcaattccacaaagcgtgcttagttcgtcaatcttcttcaataaacccttcatccttttcttgtatgttacttttcttgcagcgtcattga 13308194  T
Q  130 caatgaaagcaagtttcaccttt 152  Q
    ||||||| |||||||||||||||    
T  13308193 caatgaaggcaagtttcaccttt 13308171  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 154
Target Start/End: Complemental strand, 18949828 - 18949703
Alignment:
Q  30 gcacaagcttcaactccacatagagtgcttagttcat-aaaccttcttcaataaactcttctgccttttattgtatgttgtttttctagaagcatcattg 128  Q
    ||||||||||||| |||||| || ||||||||||||| |||| || |||||||||||||||| |||||| |||||||||| |||| ||  |||||||||     
T  18949828 gcacaagcttcaattccacaaagggtgcttagttcatcaaactttattcaataaactcttcttcctttttttgtatgttgcttttatactagcatcattt 18949729  T
Q  129 acaatgaaagcaagtttcaccttttt 154  Q
    ||| |  | | |||||||||||||||    
T  18949728 acattagaggaaagtttcaccttttt 18949703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 154
Target Start/End: Complemental strand, 19004152 - 19004027
Alignment:
Q  30 gcacaagcttcaactccacatagagtgcttagttcat-aaaccttcttcaataaactcttctgccttttattgtatgttgtttttctagaagcatcattg 128  Q
    ||||||||||||| |||||| || ||||||||||||| |||| || |||||||||||||||| |||||| |||||||||| |||| ||  |||||||||     
T  19004152 gcacaagcttcaattccacaaagggtgcttagttcatcaaactttattcaataaactcttcttcctttttttgtatgttgcttttatactagcatcattt 19004053  T
Q  129 acaatgaaagcaagtttcaccttttt 154  Q
    ||| |  | | |||||||||||||||    
T  19004052 acattagaggaaagtttcaccttttt 19004027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 154
Target Start/End: Complemental strand, 18976376 - 18976275
Alignment:
Q  54 gtgcttagttcataaaccttc-ttcaataaactcttctgccttttattgtatgttgtttttctagaagcatcattgacaatgaaagcaagtttcaccttt 152  Q
    ||||||||||||| || |||| |||||||||||||||| ||||||  ||||||||| |||| ||  || |||||| ||| |  | | |||||||||||||    
T  18976376 gtgcttagttcatcaaacttcattcaataaactcttcttcctttttatgtatgttgcttttatactagaatcatttacattagatgaaagtttcaccttt 18976277  T
Q  153 tt 154  Q
    ||    
T  18976276 tt 18976275  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 156
Target Start/End: Complemental strand, 15072998 - 15072872
Alignment:
Q  30 gcacaagcttcaactccacatagagtgcttagttcataaaccttcttcaataaactcttctgccttttattgtatgttgtttttctagaagcatcattga 129  Q
    ||||| |||||||  ||||| || |||||||||||||  ||||||||||||||| | ||||  ||||| || || |||| |||   || ||| |||||||    
T  15072998 gcacatgcttcaataccacaaagcgtgcttagttcatcgaccttcttcaataaattattctttctttttttataggttgctttctgagcagcgtcattga 15072899  T
Q  130 caatgaaagcaagtttcacctttttcc 156  Q
    ||||||| |  || |||||||||||||    
T  15072898 caatgaaggtgagcttcacctttttcc 15072872  T

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