View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19132_low_2 (Length: 573)
Name: NF19132_low_2
Description: NF19132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19132_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 18 - 561
Target Start/End: Original strand, 9299102 - 9299660
Alignment:
| Q |
18 |
ccttcaagctcgaatgtacgcataacaaaaagattcttgaacttcctactcaaccagtccctgtgaaactcatcctcactgacattgattatacaaaccc |
117 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9299102 |
ccttcaagctcgaatgtacacataacaaaaagattcttgaacttcctactcaaccagtccctgtgaaactcatcctcactgacattgattatacagaccc |
9299201 |
T |
|
| Q |
118 |
aagaatagatttatctgatcctggaaattgtttaccacagctcttacttgaccacaacttttcatcaatttttcctgttaagccttatatctccg----- |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
9299202 |
aagaatagatttatctgatcctggaaattgtttaccacaactcttacttgaccacaacttttcatcaatttttccttttaagccttatctctccggatat |
9299301 |
T |
|
| Q |
213 |
----------gaaatatcagtttcttcaattgttcttcagttgtacaactctgaagctactctcaagtgtacgaagcacaaaatatgacatcatgtccaa |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
9299302 |
tctgtatctagaaatatcagtttcttcaattgttcttcagttgtacaactcagaagctacaatcaagtgtacgaagcacaaaatatgacatcatgtccaa |
9299401 |
T |
|
| Q |
303 |
tttatgttgctgattcggatagcgaaagaatcattgaatctgatcttgtatactgcatcaaactgtttgatcgcgtttcnnnnnnncacgcatcttccat |
402 |
Q |
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||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| |
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| T |
9299402 |
tttatgttgcttattcggatagcgatagtatcattgaatctgatcttgtatactgcatcaaactgtttgatcgcgttgctttatttcccgcatcttccat |
9299501 |
T |
|
| Q |
403 |
tcaatcaaacatactctcattgaaatggtatggaacaaattttgacttaggatgcttgaaatgtgaacacaaagcaatgaaaaggattgcattcattatt |
502 |
Q |
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| T |
9299502 |
tcaatcaaacatactctcattgaaatggtatggaacaaattttgacttaggatgcttgaaatgtgaacacaaagcaatgaaaaggattgcattcattatt |
9299601 |
T |
|
| Q |
503 |
ttatcctctgcaggtgacacaactttgctcatgtcatttcatttccattttcgtatatt |
561 |
Q |
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| T |
9299602 |
ttatcctctgcaggtgacacaactttgctcatgtcatttcatttccattttcgtatatt |
9299660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 9258611 - 9258442
Alignment:
| Q |
18 |
ccttcaagctcgaatgtacgcataacaaaaagattcttgaacttcctactcaaccagtccctgtgaaactcatcctcactgacattgattatacaaaccc |
117 |
Q |
| |
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||||||||||| | ||||| ||||||| || |||||||||||||||||||| ||||| |||||||||||||| |||| |||||||||||| | |
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| T |
9258611 |
ccttcaagctcaactgtacacataacatgaatattcttgaacttcctactcacccagttcctgtgaaactcatggtcacagacattgattatcgtttcaa |
9258512 |
T |
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| Q |
118 |
aagaatagatttatctgatcctggaaattgtttaccacagctcttacttgaccacaacttttcatcaatt |
187 |
Q |
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| T |
9258511 |
aagtatagatctatctgataccagaaattgtttaccgcaactcttatttgaccacaacttttcatcaatt |
9258442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 285 - 515
Target Start/End: Complemental strand, 9258326 - 9258096
Alignment:
| Q |
285 |
atatgacatcatgtccaatttatgttgctgattcggatagcgaaagaatcattgaatctgatcttgtatactgcatcaaactgtttgatcgcgtttcnnn |
384 |
Q |
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|||||| ||| |||||||||||||| || ||||| || |||| ||| |||||||||| | ||||||||||||||| ||||||||| |||||| |
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| T |
9258326 |
atatgatatcttgtccaatttatgtcgccgattcagaccttgaaaatatcgttgaatctgacttagtatactgcatcaaattgtttgatcacgtttcctc |
9258227 |
T |
|
| Q |
385 |
nnnncacgcatcttccattcaatcaaacatactctcattgaaatggtatggaacaaattttgacttaggatgcttgaaatgtgaacacaaagcaatgaaa |
484 |
Q |
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| T |
9258226 |
atttgatgcatctactattcaatacaaccgtctctcgttgacatggtcgggaacaaattttgacataggatgcttgaaatgtgaacataaatcgaagaag |
9258127 |
T |
|
| Q |
485 |
aggattgcattcattattttatcctctgcag |
515 |
Q |
| |
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| |||| ||||| |||||||||||||||||| |
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| T |
9258126 |
aagattacattcgttattttatcctctgcag |
9258096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 9467735 - 9467665
Alignment:
| Q |
129 |
tatctgatcctggaaattgtttaccacagctcttacttgaccacaacttttcatcaatttttcctgttaag |
199 |
Q |
| |
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| T |
9467735 |
tatctgatcctggaaactgtcttccacaactcttacttgaccgcaatttttcatcaaattttccttttaag |
9467665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 471
Target Start/End: Complemental strand, 9467418 - 9467363
Alignment:
| Q |
416 |
ctctcattgaaatggtatggaacaaattttgacttaggatgcttgaaatgtgaaca |
471 |
Q |
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| T |
9467418 |
ctcttattgacatggtcaggaacaaattttgacataggatgcttgaaatgtaaaca |
9467363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 47 - 193
Target Start/End: Original strand, 9170527 - 9170673
Alignment:
| Q |
47 |
aagattcttgaacttcctactcaaccagtccctgtgaaactcatcctcactgacattgattatacaaacccaagaatagatttatctgatcctggaaatt |
146 |
Q |
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||||||||||||||||||||||| || || ||||| ||||| || |||||||||||||||||| | || || | | || |||||||||||||||| | |
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| T |
9170527 |
aagattcttgaacttcctactcatccggtacctgtaaaactaattgtcactgacattgattatagactccaaacattttatctatctgatcctggaaact |
9170626 |
T |
|
| Q |
147 |
gtttaccacagctcttacttgaccacaacttttcatcaatttttcct |
193 |
Q |
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| T |
9170627 |
gtctaccgcaactcttacttgacaacaacttttcatcaagttttcct |
9170673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 519
Target Start/End: Original strand, 9170928 - 9171020
Alignment:
| Q |
427 |
atggtatggaacaaattttgacttaggatgcttgaaatgtgaacacaaagcaatgaaaaggattgcattcattattttatcctctgcaggtga |
519 |
Q |
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| T |
9170928 |
atggtctggaacaaattttgacataagatgcttgaaatgtgagaacaaaacaaagaagaggataacactcattactttaacctcagcaggtga |
9171020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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