View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19132_low_3 (Length: 484)
Name: NF19132_low_3
Description: NF19132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19132_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Original strand, 11042228 - 11042687
Alignment:
| Q |
1 |
aaatacagtcgagatgagatgtaattgctaacagacaataatctgagctaaattgtttgataagattaatatgatatgatacaagtgactatagagagcg |
100 |
Q |
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||||||||||||||| ||||||||||||||||||| |||||||||||||||||| | ||| | ||||||||||||||||||||||||||||| |
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| T |
11042228 |
aaatacagtcgagataagatgtaattgctaacagaaaataatctgagctaaatt--------aaattgct-tgatatgatacaagtgactatagagagcg |
11042318 |
T |
|
| Q |
101 |
taataaaagaaaaacagaggttgaaattgaaacataatatggattaaggagataaacctgcaaacccatgatgcgtgtgttttagttgggagattgaaac |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
11042319 |
taattaaagaaaaacagaggttgaaattgaaacataatatggattaaggagataaacctgcaaacccatgatgcgtgtg-tttggttgggagattgaaac |
11042417 |
T |
|
| Q |
201 |
aagattgaaataata---gaggggaaatttgagatatgcgttacgttcgaagcgtgtatttataaacggataccaattatgggccgtataagaataatat |
297 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11042418 |
aagattgaaataacagaggaggggaaatttgagatatgcgttacgttcgaagtgtgtatttataaacggatacgaattatgggccgtataagaataatat |
11042517 |
T |
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| Q |
298 |
tccccactcacgcgcgtatgattaacgcgagcatatccatcaccatgaatcatattcgtctcaccgtttt---aaggtcataaattttcataggtggcgg |
394 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
11042518 |
t-cccactcacgcgcgtatgattaacgcgagcatatccatcaccatgaatcatattcgtctcaccgttttaagaaggtcataaattttcataggtgccgg |
11042616 |
T |
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| Q |
395 |
tttttatctaattaactaactaacaatatggtctcagtttcgcttcattatggtatgagggaaacatgttag |
466 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11042617 |
-ttttatctaattaactaactaacaatatggtttcagtttcgcttcattatggtatgagggaaacatgttag |
11042687 |
T |
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