View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19132_low_5 (Length: 443)
Name: NF19132_low_5
Description: NF19132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19132_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 5662948 - 5663378
Alignment:
| Q |
1 |
tgattcttccacttcttcctctcgggttctgcttctacatttatatccatttccaaattcgcccaaatacgcccat--ccgtgttcaataaaacgaaaga |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||| || | |
|
|
| T |
5662948 |
tgattcttccacttcttcctctcgggttctgcttctacatctatatccatttccaaatttgcccaaatacgcccatatccgtgttcaataaaacggaaaa |
5663047 |
T |
|
| Q |
99 |
acacggttgaatgattattcaatacaattgcatccaggtaattgtattagcaagattgaattcattgttgacggtgtatctcgctccgacttcgaagctt |
198 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
5663048 |
acacggttgaatgattattctatacaagtgcatccaggtaattgtattagcaagattgaattcattgtttatggtgtatctcgctccgacttcgaagctt |
5663147 |
T |
|
| Q |
199 |
ctgtcaccggtaagaccatggtcgcttctcacaagtagttaaag--acattagcttcacgttctcctccatttcctgtca-atttggtactcacgagcca |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5663148 |
ctgtcaccggtaagaccatggtcgcttctcacaagaagttaaagacacattagcttcacattctcctccatttcctgtcagttttggtactcacgagcca |
5663247 |
T |
|
| Q |
296 |
gtagttatgttctgctgccttgggttataacttcttcatcttcctcctgttattatactactgttgttataatagttttcttctatgctgatattgctaa |
395 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5663248 |
gtagttatgttctgctgccttggtttataacttcttcatct---ttctgttattatactactgttgttataatagttttcttctgtgctgatattgctaa |
5663344 |
T |
|
| Q |
396 |
catgttactataaactgcttatgagaatcatgtg |
429 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
5663345 |
catgttactataatctgcttatgagaatcatgtg |
5663378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 52131190 - 52131504
Alignment:
| Q |
1 |
tgattcttccacttcttcctctcgggttctgcttctacatttatatccatttccaaattcgcccaaatacgcccatccgtgttcaataaaacgaaagaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
52131190 |
tgattcttccacttcttcctctcgggttatgcttctacatctatatccatatccaaattcgcccaaatacgcccatccgtgttcagtaaaacgaa-gaac |
52131288 |
T |
|
| Q |
101 |
acggttgaatgattattcaatacaattgcatccaggtaattgtattagcaagattgaattcattgttgacggtgtatctcgctccgacttcgaagcttct |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| |||||||||||| |
|
|
| T |
52131289 |
acggttgaatgattattcaatacaagtgcatccaggtaattgtattagcaagattgaatttattattgacggtgtatctcaatccgatttcgaagcttct |
52131388 |
T |
|
| Q |
201 |
gtcaccggtaagaccatggtcgcttctcacaagtagttaaaga-cat-tagcttcacgttctcctccatttcctgtcaatttggtactcacgagccagta |
298 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||| ||||| ||| |||| ||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
52131389 |
gtcatcggtaagaccatggtcgcttctcacaagaagtcaaagaacatgtagcgtcacgttatcctccatttcctgtcaatttggtactcacgaga----a |
52131484 |
T |
|
| Q |
299 |
gttatgttctgctgccttgg |
318 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
52131485 |
gttatgttctgctgccttgg |
52131504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 167; Significance: 3e-89; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 11649374 - 11649155
Alignment:
| Q |
1 |
tgattcttccacttcttcctctcgggttctgcttctacatttatatccatttccaaattcgcccaaatacgcccatccgtgttcaataaaacgaaagaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||| ||||| | |||||| |
|
|
| T |
11649374 |
tgattcttccacttcttcctctcgggttctgcttctacatctatatccatatccaaat----------acgcccatccgtgttcactaaaaaggaagaac |
11649285 |
T |
|
| Q |
101 |
acggttgaatgattattcaatacaattgcatccaggtaattgtattagcaagattgaattcattgttgacggtgtatctcgctccgacttcgaagcttct |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11649284 |
acggttgaatgattattcaatacaagtgcatccaggtaattgtattagcaagattgaattcattgttgacggtgtatctcgctccgacttcgaagcttct |
11649185 |
T |
|
| Q |
201 |
gtcaccggtaagaccatggtcgcttctcac |
230 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |
|
|
| T |
11649184 |
gtcatcggtaagaccatggtcgcttctcac |
11649155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 67 - 285
Target Start/End: Original strand, 22007660 - 22007884
Alignment:
| Q |
67 |
atacgcccatccgtgttcaataaaacgaaagaacacggttgaatgattattcaatacaattgcatccaggtaattgtattagcaagattgaattcattgt |
166 |
Q |
| |
|
|||||||| || ||||||| ||||| | |||||||| ||||||||||||||||||||| ||||||||| ||| ||||||| |||| |||||||||||| |
|
|
| T |
22007660 |
atacgcccctctgtgttcagtaaaaaggaagaacactgttgaatgattattcaatacaggtgcatccagataagtgtattacgaagactgaattcattgt |
22007759 |
T |
|
| Q |
167 |
tgacggtgtatctcgctccgacttcgaagcttctgtcaccggtaagaccatggtcgcttctcacaagtagttaaag-acat-tagcttcacg----ttct |
260 |
Q |
| |
|
|| |||||||||||||| ||||||| || ||||||||| || |||||||||||||||| ||||||| |||||||| |||| |||||||||| |||| |
|
|
| T |
22007760 |
tggcggtgtatctcgcttcgacttcaaaacttctgtcatcgtcaagaccatggtcgcttttcacaagaagttaaagaacatgtagcttcacgttgattct |
22007859 |
T |
|
| Q |
261 |
cctccatttcctgtcaatttggtac |
285 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
22007860 |
cctccatttcctgtcaatttggtac |
22007884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 22007574 - 22007612
Alignment:
| Q |
2 |
gattcttccacttcttcctctcgggttctgcttctacat |
40 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
22007574 |
gattcttccacttcttcctctcggcttccgcttctacat |
22007612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 318
Target Start/End: Complemental strand, 11649159 - 11649126
Alignment:
| Q |
285 |
ctcacgagccagtagttatgttctgctgccttgg |
318 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
11649159 |
ctcacgagccagcagttatgttctgctgccttgg |
11649126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 178
Target Start/End: Original strand, 14231210 - 14231304
Alignment:
| Q |
82 |
ttcaataaaacgaaagaacacggttgaatgattattcaatacaattgcatccaggtaattgtattagcaagattgaattcattgttgacggtgtatc |
178 |
Q |
| |
|
|||| ||||| | |||||||||||||||||| |||||||||| ||||||||| |||| |||||| |||| | ||| ||||||| ||||||||| |
|
|
| T |
14231210 |
ttcagtaaaaaggaagaacacggttgaatga--attcaatacaggtgcatccagataataatattaggaagactagatttattgttggcggtgtatc |
14231304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University