View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19132_low_6 (Length: 422)
Name: NF19132_low_6
Description: NF19132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19132_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 17 - 419
Target Start/End: Original strand, 37715000 - 37715405
Alignment:
| Q |
17 |
acaaattactgcaagagttaatggctttggatagtgttttgatcctgtccaagnnnnnnnntgaaatacagaaaatatataagagggcatatatatatac |
116 |
Q |
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| T |
37715000 |
acaaattactgcaagagttaatggctttggatagtgtttggatcctgtccaagaaaaaaaatgaaatacagaaaatatataagagggcatatatatatac |
37715099 |
T |
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| Q |
117 |
catttgatcacaatttgaaaaagtttaaatcgctatgaaaatttagaaatgaaaaaatgcaatatccatctctaattatgtggcaagtattagagacgaa |
216 |
Q |
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| T |
37715100 |
catttgatcacaatttgaaaaagtttaaatcgctatgaaaatttagaaatgaaaaaatgcaatatccatctctaattatgtggcaagtattagagacgaa |
37715199 |
T |
|
| Q |
217 |
aaatgtactaaccaatgttaaatttttcgtctctaatttttgtcaatatttcaactgtttttactttttagtagtgattgttactgaagtcattcaattc |
316 |
Q |
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| T |
37715200 |
aaatgtactaaccaatgttaaatttttcgtctctaatttttgtcgatatttcaactgtttttactttttagtagtgattgttactgaagtcattcaattc |
37715299 |
T |
|
| Q |
317 |
aat-tttttcaaagaaaagtccgacttttttcttcatttattccaacagaaaattnnnnnnntaaatttct--agatacgactaattaaaaatcaacctt |
413 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
37715300 |
aatctttttcaaagaaaagtccgacttttttcttcatttattccaacagaaaattaaaaaaataaatttctagagatacgactaattaaaaatcaacctt |
37715399 |
T |
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| Q |
414 |
tgatac |
419 |
Q |
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|||||| |
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| T |
37715400 |
tgatac |
37715405 |
T |
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