View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19132_low_7 (Length: 383)
Name: NF19132_low_7
Description: NF19132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19132_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 15656705 - 15656342
Alignment:
| Q |
1 |
tctacatggaaactggccagcagcagagtgcatcatagacaaagagaataagctcaaaaatgctgccataacaattgggtgtcctactctactgcatatt |
100 |
Q |
| |
|
|||| ||||||||||||| ||||| || |||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
15656705 |
tctaaatggaaactggccggcagctaagcgcatcatagagaaagagaataagctcaaaaatgctgccataacaaatgggtatcctactctactgcatatt |
15656606 |
T |
|
| Q |
101 |
gctgcaggtgcaaaccacattcactttgtgaaggagctattgaagatgcttgatgataatgatatatatttgcaagatatcaatggaaacactgcttttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| || |||||||||||||||| |
|
|
| T |
15656605 |
gctgcaggtgcaaaccacattcactttgtgaaggagctattgaagatgcttgatgacaatgatataacattgcaagatatgaacggaaacactgcttttt |
15656506 |
T |
|
| Q |
201 |
gctatgctgcggcagctggaaacattgaaattgttgacttactgttggataggaactcacaattacctataaccagaagtggaaatggaaatactcctat |
300 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
15656505 |
gctttgctgctgcagctggaaacattgaaattgttgacttactgttggatacaaactcacaattacctgtaaaaagaagtggaaatggaaatactcctat |
15656406 |
T |
|
| Q |
301 |
tcagtatgctgctctgcatggaagatgcaaaatgacatggcatctatatgatagaaccacacat |
364 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15656405 |
tcagtatgctgctctgcaaggaagatgcaaaatgacatggcatctatatgataaaaccacacat |
15656342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 15609009 - 15608648
Alignment:
| Q |
1 |
tctacatggaaactggccagcagcagagtgcatcatagacaaagagaataagctcaaaaatgctgccataacaattgggtgtcctactctactgcatatt |
100 |
Q |
| |
|
||||||||||||||||| |||||| | |||| ||||||| ||||| | ||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
15609009 |
tctacatggaaactggcgagcagccaaacacatcttagacaacgagaacaggctcaaaaatgctgccataacaaatgggtatcctactctactgcatatc |
15608910 |
T |
|
| Q |
101 |
gctgcaggtgcaaaccacattcactttgtgaaggagctattgaagatgcttgatgataatgatatatatttgcaagatatcaatggaaacactgcttttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| | |||||||| ||||||| |
|
|
| T |
15608909 |
gctgcaggtgcaaaccacattcactttgtgaaggagctattgaagatgcttgatgagaatgatataacattgcaagataagatcggaaacaccgcttttt |
15608810 |
T |
|
| Q |
201 |
gctatgctgcggcagctggaaacattgaaattgttgacttactgttggataggaactcacaattacctataaccagaagtggaaatggaaatactcctat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||| |||||||||| |
|
|
| T |
15608809 |
gctatgctgcggcagctggaaacattgaaattgttgacttactgttggataggaactcacaattacctgtaaaaagggctggaaatggatatactcctat |
15608710 |
T |
|
| Q |
301 |
tcagtatgctgctctgcatggaagatgcaaaatgacatggcatctatatgatagaaccacac |
362 |
Q |
| |
|
||||||||| |||||||| ||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
15608709 |
tcagtatgcggctctgcaaggaagatctaaaatgacatggcatctatatgataaaaccacac |
15608648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 30 - 364
Target Start/End: Complemental strand, 15647357 - 15647023
Alignment:
| Q |
30 |
gcatcatagacaaagagaataagctcaaaaatgctgccataacaattgggtgtcctactctactgcatattgctgcaggtgcaaaccacattcactttgt |
129 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||| |||||| ||||| ||| |||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
15647357 |
gcatcttagacaaagagaagaagctcaaaaatgctgccataacaaatgggtggcctacactattgcatattgcagcaggtgcaaaccacatccactttgt |
15647258 |
T |
|
| Q |
130 |
gaaggagctattgaagatgcttgatgataatgatatatatttgcaagatatcaatggaaacactgctttttgctatgctgcggcagctggaaacattgaa |
229 |
Q |
| |
|
||||||| ||||||| ||||||||||| || ||| || ||||||||| |||| ||||||||||||||||||| |||||| |||||||||||||| ||| |
|
|
| T |
15647257 |
gaaggagttattgaatatgcttgatgacaaagatttagcattgcaagatgtcaacggaaacactgctttttgctttgctgctgcagctggaaacatggaa |
15647158 |
T |
|
| Q |
230 |
attgttgacttactgttggataggaactcacaattacctataaccagaagtggaaatggaaatactcctattcagtatgctgctctgcatggaagatgca |
329 |
Q |
| |
|
|||||||||||| |||| |||||||||||||| |||||| ||| || ||||||| ||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15647157 |
attgttgacttaatgttagataggaactcacagttacctgtaaaaaggggtggaaaaggatatactcctattcagtatgctgctctgcaaggaagatgca |
15647058 |
T |
|
| Q |
330 |
aaatgacatggcatctatatgatagaaccacacat |
364 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||| |
|
|
| T |
15647057 |
aaatgacatggcatctatatgataaaaccatacat |
15647023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 15627060 - 15626697
Alignment:
| Q |
1 |
tctacatggaaactggccagcagcagagtgcatcatagacaaagagaataagctcaaaaatgctgccataacaattgggtgtcctactctactgcatatt |
100 |
Q |
| |
|
|||| ||||||||||||||||||| || ||||| ||||| |||| ||||||| ||||||||||||||| ||| ||||||||| || ||| |||||||| |
|
|
| T |
15627060 |
tctaaatggaaactggccagcagccaagcgcatcttagacgaagacgataagctgaaaaatgctgccatagcaaatgggtgtccaacactattgcatatt |
15626961 |
T |
|
| Q |
101 |
gctgcaggtgcaaaccacattcactttgtgaaggagctattgaagatgcttgatgataatgatatatatttgcaagatatcaatggaaacactgcttttt |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||| || |||||||| ||||| ||| ||||||||||| || |||||||||||||||| |
|
|
| T |
15626960 |
gctgcaggtgcaaaccgcattcactttgtgaaggagttattgagtattcttgatgacaatgacatagcgttgcaagatatgaaaggaaacactgcttttt |
15626861 |
T |
|
| Q |
201 |
gctatgctgcggcagctggaaacattgaaattgttgacttactgttggataggaactcacaattacctataaccagaagtggaaatggaaatactcctat |
300 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||| ||| |||||||||| |
|
|
| T |
15626860 |
gctttgctgctgcagctggaaacattgaaattgttgacttactgttggataggaactcacaattacctgtaataagggatggaaaaggatatactcctat |
15626761 |
T |
|
| Q |
301 |
tcagtatgctgctctgcatggaagatgcaaaatgacatggcatctatatgatagaaccacacat |
364 |
Q |
| |
|
||||||||||||| |||| ||||| || |||| |||||||||||||||||| | ||||| |||| |
|
|
| T |
15626760 |
tcagtatgctgctttgcaaggaaggtgtaaaacgacatggcatctatatgagaaaaccatacat |
15626697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 6 - 352
Target Start/End: Complemental strand, 15519860 - 15519514
Alignment:
| Q |
6 |
atggaaactggccagcagcagagtgcatcatagacaaagagaataagctcaaaaatgctgccataacaattgggtgtcctactctactgcatattgctgc |
105 |
Q |
| |
|
||||||||||||||||||| || |||| |||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
15519860 |
atggaaactggccagcagctaagcgcattatagacaaagagaataagctaaaaaatgctgccataacaaatgggtatcctactctactgcatattgctgc |
15519761 |
T |
|
| Q |
106 |
aggtgcaaaccacattcactttgtgaaggagctattgaagatgcttgatgataatgatatatatttgcaagatatcaatggaaacactgctttttgctat |
205 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| || |||||||||||||||| | |
|
|
| T |
15519760 |
aggtgcaaaccatattcactttgtgaaggagctattgaagatgcttgatgacaatgatataacattgcaagatatgaacggaaacactgctttttttatt |
15519661 |
T |
|
| Q |
206 |
gctgcggcagctggaaacattgaaattgttgacttactgttggataggaactcacaattacctataaccagaagtggaaatggaaatactcctattcagt |
305 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||| || || | | ||| | | ||||| || | | ||| ||| ||| | |||||||||||| |
|
|
| T |
15519660 |
gctgctgcagctggaaacatgaaaattgttgacttaatgctgaaaataaaccccaagttaccaattataaagggtgcaaaaggatgtgctcctattcagt |
15519561 |
T |
|
| Q |
306 |
atgctgctctgcatggaagatgcaaaatgacatggcatctatatgat |
352 |
Q |
| |
|
|||||||| |||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
15519560 |
atgctgctttgcaaggaagatacaaaatgacatggcatctatatgat |
15519514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 43 - 359
Target Start/End: Complemental strand, 15536120 - 15535804
Alignment:
| Q |
43 |
agagaataagctcaaaaatgctgccataacaattgggtgtcctactctactgcatattgctgcaggtgcaaaccacattcactttgtgaaggagctattg |
142 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15536120 |
agagaataagctcaaaaatgctgccatagcatttgggtctcctactctattgcatattgctgcaggtgcaaaccacattcactttgtgaaggagttattg |
15536021 |
T |
|
| Q |
143 |
aagatgcttgatgataatgatatatatttgcaagatatcaatggaaacactgctttttgctatgctgcggcagctggaaacattgaaattgttgacttac |
242 |
Q |
| |
|
|||||||||||||| || |||||| | |||| |||||| || |||||||||||||| | |||||| || |||||||| |||||||||||||||||| |
|
|
| T |
15536020 |
aagatgcttgatgacaaagatatagaattgctagatatgaacggaaacactgctttctttattgctgctgctgctggaaatattgaaattgttgacttaa |
15535921 |
T |
|
| Q |
243 |
tgttggataggaactcacaattacctataaccagaagtggaaatggaaatactcctattcagtatgctgctctgcatggaagatgcaaaatgacatggca |
342 |
Q |
| |
|
|| || | | ||| | ||||| || | || || | | ||| ||||||||||||||||||||||| |||| ||||||| ||||||||||||||| |
|
|
| T |
15535920 |
tgctgaaaataaaccccattttaccaattataaggggtacagaaggatatactcctattcagtatgctgctttgcaaggaagatacaaaatgacatggca |
15535821 |
T |
|
| Q |
343 |
tctatatgatagaacca |
359 |
Q |
| |
|
||| ||||||| ||||| |
|
|
| T |
15535820 |
tctttatgataaaacca |
15535804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 8 - 353
Target Start/End: Complemental strand, 15495817 - 15495472
Alignment:
| Q |
8 |
ggaaactggccagcagcagagtgcatcatagacaaagagaataagctcaaaaatgctgccataacaattgggtgtcctactctactgcatattgctgcag |
107 |
Q |
| |
|
||||||||||| ||||| | ||||| |||||||| ||||| |||| ||||||||||||||| ||| |||||| | ||| |||||||||||| |||||| |
|
|
| T |
15495817 |
ggaaactggcctgcagccaaacgcatcttagacaaacagaatgagcttaaaaatgctgccatagcaaatgggtggcatacactactgcatatttctgcag |
15495718 |
T |
|
| Q |
108 |
gtgcaaaccacattcactttgtgaaggagctattgaagatgcttgatgataatgatatatatttgcaagatatcaatggaaacactgctttttgctatgc |
207 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||| |||||| ||||||||||| || ||| |
|
|
| T |
15495717 |
gtgcaaaccaaattcactttgtgaaggagctattgaagatgcttcatgacaatgatatagcattgcaagatgccaatggtaacactgctttctgtattgc |
15495618 |
T |
|
| Q |
208 |
tgcggcagctggaaacattgaaattgttgacttactgttggataggaactcacaattacctataaccagaagtggaaatggaaatactcctattcagtat |
307 |
Q |
| |
|
||| |||| ||||||||| |||||||||||||| || || | || ||| | | |||||||| | ||| ||| | ||| |||||||||||||| || |
|
|
| T |
15495617 |
tgctgcagttggaaacatgaaaattgttgacttaatgctgaaaagaaaccccgatttacctattataagaggtgcattaggatatactcctattcagaat |
15495518 |
T |
|
| Q |
308 |
gctgctctgcatggaagatgcaaaatgacatggcatctatatgata |
353 |
Q |
| |
|
||||| |||| ||||||| ||||||| |||||||||||||||||| |
|
|
| T |
15495517 |
gctgcattgcaaggaagatacaaaatggcatggcatctatatgata |
15495472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University