View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19132_low_9 (Length: 341)

Name: NF19132_low_9
Description: NF19132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19132_low_9
NF19132_low_9
[»] chr8 (3 HSPs)
chr8 (166-285)||(42202697-42202816)
chr8 (168-269)||(44684481-44684582)
chr8 (175-212)||(3578048-3578085)
[»] chr4 (4 HSPs)
chr4 (166-264)||(18848062-18848160)
chr4 (166-256)||(55329158-55329248)
chr4 (166-269)||(42111001-42111104)
chr4 (165-263)||(55353568-55353666)
[»] chr7 (4 HSPs)
chr7 (166-263)||(19883466-19883563)
chr7 (166-264)||(6232215-6232314)
chr7 (166-264)||(48888188-48888286)
chr7 (166-264)||(44346487-44346585)
[»] chr5 (4 HSPs)
chr5 (166-256)||(3678241-3678330)
chr5 (172-269)||(3761007-3761104)
chr5 (166-262)||(2756301-2756397)
chr5 (166-264)||(42628996-42629094)
[»] chr6 (1 HSPs)
chr6 (166-264)||(380662-380761)
[»] chr3 (2 HSPs)
chr3 (166-264)||(51361280-51361378)
chr3 (1-48)||(22922023-22922070)
[»] chr2 (2 HSPs)
chr2 (166-233)||(38971056-38971123)
chr2 (172-253)||(16080465-16080546)
[»] chr1 (1 HSPs)
chr1 (172-269)||(13155021-13155117)
[»] scaffold0691 (1 HSPs)
scaffold0691 (166-269)||(1186-1289)


Alignment Details
Target: chr8 (Bit Score: 116; Significance: 6e-59; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 166 - 285
Target Start/End: Original strand, 42202697 - 42202816
Alignment:
Q  166 agacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttagaggtgtctgggactta 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42202697 agacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggcagttttagaggtgtctgggactta 42202796  T
Q  266 tggttctagagctcgcaggt 285  Q
    ||||||||||||||||||||    
T  42202797 tggttctagagctcgcaggt 42202816  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 168 - 269
Target Start/End: Original strand, 44684481 - 44684582
Alignment:
Q  168 acttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttagaggtgtctgggacttatg 267  Q
    ||||||||||||||| ||||||| ||| ||||||||||||||||| |  ||||||||  |  || || ||||| ||||||||||||||||||||||| ||    
T  44684481 acttaagagtcctccctgcctcttttatgagtggtgttggaaccccaaggaatgcttgctccgacaggtggggtagttttagaggtgtctgggacttttg 44684580  T
Q  268 gt 269  Q
    ||    
T  44684581 gt 44684582  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 3578085 - 3578048
Alignment:
Q  175 agtcctccttgcctctattacgagtggtgttggaaccc 212  Q
    ||||||| |||||||| |||||||||||||||||||||    
T  3578085 agtcctctttgcctcttttacgagtggtgttggaaccc 3578048  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 166 - 264
Target Start/End: Original strand, 18848062 - 18848160
Alignment:
Q  166 agacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttagaggtgtctgggactt 264  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||| |  |||||| ||||||||||| ||||| ||||||||||||||| |||||||    
T  18848062 agacttaaaagtcctccctgcctctattacgagtggtgttggaaccccaaggaatgcctattgagatagttggggtagttttagaggtgtccgggactt 18848160  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 166 - 256
Target Start/End: Original strand, 55329158 - 55329248
Alignment:
Q  166 agacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttagaggtgtc 256  Q
    |||||||||||| |||||||||||||||||||||||||||||||||  |  |||||||||||||||||| ||||| |||||||||||||||    
T  55329158 agacttaagagttctccttgcctctattacgagtggtgttggaacctcaaggaatgcttattgagataggtggggcagttttagaggtgtc 55329248  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 269
Target Start/End: Complemental strand, 42111104 - 42111001
Alignment:
Q  166 agacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttagaggtgtctgggactta 265  Q
    ||||||||||||||||  ||||||| ||  ||||||||||||||||| |  ||||||||  |  || || ||||| ||||||||||||||| |||||||     
T  42111104 agacttaagagtcctcactgcctcttttttgagtggtgttggaaccccaaggaatgcttgctccgacaggtggggtagttttagaggtgtccgggacttt 42111005  T
Q  266 tggt 269  Q
    ||||    
T  42111004 tggt 42111001  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 263
Target Start/End: Original strand, 55353568 - 55353666
Alignment:
Q  165 cagacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttagaggtgtctgggact 263  Q
    ||||||||| |||||||||||||||| |||||| ||||| |||||||| |   ||||| | ||| ||||| ||||| ||||| ||||||| | ||||||    
T  55353568 cagacttaaaagtcctccttgcctcttttacgattggtgctggaaccccaagaaatgccttttgcgataggtggggtagtttcagaggtggcagggact 55353666  T

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Target: chr7 (Bit Score: 62; Significance: 9e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 166 - 263
Target Start/End: Complemental strand, 19883563 - 19883466
Alignment:
Q  166 agacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttagaggtgtctgggact 263  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||| |  ||||| |||||||||||| ||||| ||||||||||||||| ||||||    
T  19883563 agactaaagagtcctccgtgcctctattacgagtggtgttggaaccccaaggaatgtttattgagatagttggggtagttttagaggtgtccgggact 19883466  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 166 - 264
Target Start/End: Original strand, 6232215 - 6232314
Alignment:
Q  166 agacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagat-agatggggaagttttagaggtgtctgggactt 264  Q
    ||||||| ||||||||| |||||||||||||||||||| |||||||| |  |||||||||||||||| |  ||||| ||||||||||||||| |||||||    
T  6232215 agacttaggagtcctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattgagataatgtggggcagttttagaggtgtccgggactt 6232314  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 166 - 264
Target Start/End: Original strand, 48888188 - 48888286
Alignment:
Q  166 agacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttagaggtgtctgggactt 264  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| |  |||||  | ||||||| | ||||| |||| |||||||||| |||||||    
T  48888188 agactaaagagtcctccttgcctctattacgagtggtgttggaaccccaaggaatgtcttttgagattggtggggtagttctagaggtgtccgggactt 48888286  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 264
Target Start/End: Original strand, 44346487 - 44346585
Alignment:
Q  166 agacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttagaggtgtctgggactt 264  Q
    |||||||| |||||||||||||||| |||| ||||||| |||||||| |  |||||| | ||| | ||| ||||||||||| ||||||||  |||||||    
T  44346487 agacttaaaagtcctccttgcctcttttacaagtggtgctggaaccccaaagaatgccttttgcgttaggtggggaagtttcagaggtgttagggactt 44346585  T

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Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 166 - 256
Target Start/End: Complemental strand, 3678330 - 3678241
Alignment:
Q  166 agacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttagaggtgtc 256  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||| |||||| | ||| |||||||||||||||    
T  3678330 agacttaagagtcctccttgcctctattacaagttgtgttggaaccccatcgaatgcttattaagataggt-gggcagttttagaggtgtc 3678241  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 172 - 269
Target Start/End: Complemental strand, 3761104 - 3761007
Alignment:
Q  172 aagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttagaggtgtctgggacttatggt 269  Q
    |||||| |||| ||||||||||||||||| |||| |||||| |  ||||| ||| ||| |||| ||||| |||||||||||||| |||||||| ||||    
T  3761104 aagagttctccctgcctctattacgagtgctgtttgaaccccaaggaatgtttactgatatagctggggtagttttagaggtgtttgggacttttggt 3761007  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 262
Target Start/End: Complemental strand, 2756397 - 2756301
Alignment:
Q  166 agacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttagaggtgtctgggac 262  Q
    ||||| ||||| ||||| ||||| ||||||||||||||||||||||| |   |||| ||| |||||||| ||||| ||||||||||| ||| |||||    
T  2756397 agactaaagaggcctccgtgcctttattacgagtggtgttggaaccccaagaaatgtttactgagatagttggggtagttttagaggcgtccgggac 2756301  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 264
Target Start/End: Complemental strand, 42629094 - 42628996
Alignment:
Q  166 agacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttagaggtgtctgggactt 264  Q
    ||||| || |||||||| ||||||||||| ||||||||| ||||||| |  |||||  |  |||||||| ||||| ||||||||||| ||| |||||||    
T  42629094 agactgaaaagtcctccctgcctctattatgagtggtgtcggaaccccaaggaatgtcttctgagatagttggggtagttttagaggcgtccgggactt 42628996  T

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Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 166 - 264
Target Start/End: Complemental strand, 380761 - 380662
Alignment:
Q  166 agacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagat-agatggggaagttttagaggtgtctgggactt 264  Q
    ||||||| ||||||||| |||||||||||||||||||| |||||||| |  |||||||||||||||| |  ||||| ||||||||||||||| |||||||    
T  380761 agacttaggagtcctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattgagataacgtggggcagttttagaggtgtccgggactt 380662  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 166 - 264
Target Start/End: Original strand, 51361280 - 51361378
Alignment:
Q  166 agacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttagaggtgtctgggactt 264  Q
    ||||| || ||| |||| ||||||||||| ||||||||||||||||| |  |||||| ||||||||||| ||||| ||||||||||||||| |||||||    
T  51361280 agactcaaaagttctccctgcctctattatgagtggtgttggaaccccaaggaatgcctattgagatagttggggtagttttagaggtgtcagggactt 51361378  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 22922070 - 22922023
Alignment:
Q  1 atcactctttgtacgataaaagtatgtggaataatatttggtatcttg 48  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  22922070 atcactctttgtacgataaaagtatgtgcaataatatttggtatcttg 22922023  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 38971056 - 38971123
Alignment:
Q  166 agacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagata 233  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||| |  |||||||||||||||||    
T  38971056 agacttaaaagtcctcattgcctctattacgagtggtgttggaaccccaaagaatgcttattgagata 38971123  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 16080465 - 16080546
Alignment:
Q  172 aagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttagaggt 253  Q
    ||||||||||||||||||| ||| ||||||||||||||||| |  ||||| ||  ||||| |  ||||| ||||||||||||    
T  16080465 aagagtcctccttgcctcttttatgagtggtgttggaaccccaaggaatgtttgatgagaaaattggggtagttttagaggt 16080546  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 172 - 269
Target Start/End: Original strand, 13155021 - 13155117
Alignment:
Q  172 aagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttagaggtgtctgggacttatggt 269  Q
    ||||||||| |||||||||||||||||||||||| ||||||||  ||||| ||| ||||| || | ||| || ||||||||||| |||||||| ||||    
T  13155021 aagagtcctacttgcctctattacgagtggtgtttgaaccctaaagaatgtttactgagaaagctcgggtag-tttagaggtgtttgggacttttggt 13155117  T

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Target: scaffold0691 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 269
Target Start/End: Original strand, 1186 - 1289
Alignment:
Q  166 agacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttagaggtgtctgggactta 265  Q
    ||||||||||||||||| ||||||| ||| |||||||||||||| || |  ||||||||  |  || || ||||| ||||||||||||||| |||||||     
T  1186 agacttaagagtcctccctgcctcttttatgagtggtgttggaagcccaaggaatgcttgctccgacaggtggggtagttttagaggtgtccgggacttt 1285  T
Q  266 tggt 269  Q
    ||||    
T  1286 tggt 1289  T

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