View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19133_high_14 (Length: 393)
Name: NF19133_high_14
Description: NF19133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19133_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 37303669 - 37303288
Alignment:
| Q |
1 |
atatctgattttttatattttgttggagaatcctcctatcgcaccaaactgcagaatatggtcagatagatgtaaatggttcactaaatgaataccgagc |
100 |
Q |
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| T |
37303669 |
atatctgattttt-atattttgttggagaatcctcctatcgcaccaaactgcaaaatatggtcagatagatgtaaatggttcactaaatgaataccgagc |
37303571 |
T |
|
| Q |
101 |
cattgcctaactaagactcatatgcttccataattgtcacaactcaaaatcaggtgatcaatgccttcctctggatggcaaccactaacacacacattta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37303570 |
cattgcctaactaagactcatatgcttccataattgtcacaactcaaaatcaggtgatcaatgccttcctctggatggcaaccactaacacacacattca |
37303471 |
T |
|
| Q |
201 |
aatttggttgaataacttcacaccttactagattgtcctttcaagaaatttgattccttgacaagcgtcaaaggaatatagatactttgagtgaaattgc |
300 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37303470 |
aatttggttgaataacttcacacctaactagattgtcctttcaagaaatttgattccttgacaagcgtcaagggaatatagatactttgagtgaaattgc |
37303371 |
T |
|
| Q |
301 |
tttattctaaataatgtcaagaaattcgaccggactcctcaacttcaatgtcatcaacatgtgataaaccccactgatgatgt |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37303370 |
tttattctaaataatgtcaagaaattcgaccggactcctcaacttcaatgtcatcaacatgtgataaaccccactaatgatgt |
37303288 |
T |
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