View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19133_high_22 (Length: 295)
Name: NF19133_high_22
Description: NF19133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19133_high_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 2 - 280
Target Start/End: Original strand, 36135478 - 36135756
Alignment:
| Q |
2 |
atatattcaagcgcattgttatattgataaaagcttggtgttaccatgagagtcgtctcttgggttctaagagcggactcttttcaacttatgtgttgga |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
36135478 |
atatattcaagcgcattgttatattgataaaagcttggtgttaccatgagagtcgtctcttgggttctaagagtggactcttttcaacttatgtgttgga |
36135577 |
T |
|
| Q |
102 |
aattttagtcctctacatatttaatctttacaacaatgaatttgttggaccatttgaggtgacaaacttgattattttgatgtatatattaacattaata |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36135578 |
aattttagtcctctacatatttaatctttacaacaatgaatttgttggaccatttgaggtgacaaacttgattattttgatgtatatattaacattaata |
36135677 |
T |
|
| Q |
202 |
tggcttatgaagaataagaaaattaaatttatgttattttgatcctattgttatgcatatatgattgagttgatcatat |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36135678 |
tggcttatgaagaataagaaaattaaatttatgttattttgatcctattgttatgcatatatgattgagttgatcatat |
36135756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 2 - 253
Target Start/End: Original strand, 41336910 - 41337161
Alignment:
| Q |
2 |
atatattcaagcgcattgttatattgataaaagcttggtgttaccatgagagtcgtctcttgggttctaagagcggactcttttcaacttatgtgttgga |
101 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
41336910 |
atatattcaagcgcagtgttatattgataaaagcttggtgttaccatgagagtcgtctcttgggttctaagagtggactcttttcaacttatgcgttgga |
41337009 |
T |
|
| Q |
102 |
aattttagtcctctacatatttaatctttacaacaatgaatttgttggaccatttgaggtgacaaacttgattattttgatgtatatattaacattaata |
201 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41337010 |
aattttagtcctatacttatttaatctttacaacaatgaatttgttggaccacttgaggtgacaaacttgattattttgatgtatatattaatattaata |
41337109 |
T |
|
| Q |
202 |
tggcttatgaagaataagaaaattaaatttatgttattttgatcctattgtt |
253 |
Q |
| |
|
|||||||||||| ||||||| || |||||||||||||||||||| ||||||| |
|
|
| T |
41337110 |
tggcttatgaaggataagaagataaaatttatgttattttgatcttattgtt |
41337161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University