View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19133_high_29 (Length: 250)

Name: NF19133_high_29
Description: NF19133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19133_high_29
NF19133_high_29
[»] chr4 (16 HSPs)
chr4 (3-242)||(34458134-34458373)
chr4 (3-242)||(43137962-43138196)
chr4 (9-242)||(47682030-47682256)
chr4 (3-242)||(36444927-36445156)
chr4 (3-242)||(31763721-31763954)
chr4 (3-242)||(53995533-53995765)
chr4 (3-224)||(7290751-7290963)
chr4 (3-153)||(23602008-23602155)
chr4 (3-167)||(47304991-47305152)
chr4 (30-241)||(50689319-50689525)
chr4 (3-218)||(1458376-1458585)
chr4 (73-241)||(19902243-19902404)
chr4 (4-81)||(40712010-40712087)
chr4 (209-241)||(13611303-13611335)
chr4 (3-58)||(52255676-52255731)
chr4 (32-70)||(43623902-43623940)
[»] chr5 (10 HSPs)
chr5 (3-241)||(31335350-31335582)
chr5 (3-241)||(31303037-31303267)
chr5 (3-242)||(10541530-10541760)
chr5 (39-242)||(40897330-40897527)
chr5 (21-242)||(34583257-34583470)
chr5 (3-242)||(31223680-31223913)
chr5 (66-242)||(5926727-5926896)
chr5 (3-242)||(12621325-12621557)
chr5 (136-230)||(28376498-28376586)
chr5 (7-44)||(5926698-5926735)
[»] chr7 (10 HSPs)
chr7 (10-242)||(9458709-9458935)
chr7 (8-242)||(26425196-26425423)
chr7 (3-239)||(5734192-5734423)
chr7 (3-231)||(3525930-3526151)
chr7 (1-242)||(21523687-21523921)
chr7 (3-117)||(4920138-4920252)
chr7 (53-167)||(12217982-12218096)
chr7 (9-167)||(27157550-27157707)
chr7 (209-241)||(9625911-9625943)
chr7 (11-75)||(31932676-31932740)
[»] chr2 (27 HSPs)
chr2 (8-242)||(41534738-41534965)
chr2 (3-241)||(40355901-40356130)
chr2 (3-242)||(15440511-15440742)
chr2 (3-242)||(5305488-5305720)
chr2 (3-221)||(12068568-12068779)
chr2 (3-202)||(30487705-30487892)
chr2 (3-202)||(38855482-38855673)
chr2 (3-167)||(42472396-42472554)
chr2 (3-110)||(34639816-34639923)
chr2 (3-75)||(19089935-19090007)
chr2 (175-231)||(34639965-34640021)
chr2 (9-117)||(38119568-38119676)
chr2 (178-242)||(42472289-42472353)
chr2 (3-79)||(45571235-45571311)
chr2 (3-79)||(45574902-45574978)
chr2 (3-79)||(45578569-45578645)
chr2 (3-79)||(45582236-45582312)
chr2 (3-79)||(45585903-45585979)
chr2 (3-79)||(45589570-45589646)
chr2 (3-79)||(45593237-45593313)
chr2 (3-79)||(45596904-45596980)
chr2 (3-79)||(45600571-45600647)
chr2 (3-79)||(45604238-45604314)
chr2 (3-79)||(45607905-45607981)
chr2 (3-79)||(45611572-45611648)
chr2 (3-79)||(45615239-45615315)
chr2 (7-104)||(16400237-16400333)
[»] chr6 (10 HSPs)
chr6 (9-242)||(692903-693126)
chr6 (7-242)||(22293242-22293470)
chr6 (30-239)||(22300241-22300443)
chr6 (8-202)||(16166570-16166757)
chr6 (121-239)||(15055452-15055564)
chr6 (161-242)||(6138948-6139029)
chr6 (3-96)||(16464076-16464169)
chr6 (172-242)||(16463973-16464043)
chr6 (3-81)||(15973499-15973577)
chr6 (39-96)||(6139076-6139133)
[»] chr1 (8 HSPs)
chr1 (47-238)||(51126680-51126862)
chr1 (3-194)||(40708151-40708335)
chr1 (3-239)||(35361903-35362132)
chr1 (3-202)||(3289109-3289302)
chr1 (30-239)||(13640833-13641035)
chr1 (3-167)||(13260336-13260500)
chr1 (7-167)||(9856800-9856960)
chr1 (1-79)||(12569684-12569762)
[»] chr8 (9 HSPs)
chr8 (5-242)||(27209124-27209352)
chr8 (3-242)||(29442524-29442755)
chr8 (3-241)||(6635677-6635908)
chr8 (3-243)||(6627878-6628111)
chr8 (30-241)||(29909747-29909951)
chr8 (8-242)||(5938266-5938492)
chr8 (3-225)||(8109255-8109468)
chr8 (179-230)||(14858149-14858200)
chr8 (172-242)||(18421577-18421645)
[»] chr3 (8 HSPs)
chr3 (44-242)||(9798047-9798235)
chr3 (3-202)||(53200271-53200462)
chr3 (8-242)||(54739612-54739839)
chr3 (3-221)||(44027840-44028047)
chr3 (3-70)||(50424682-50424749)
chr3 (7-49)||(40709660-40709702)
chr3 (3-43)||(43106280-43106320)
chr3 (8-72)||(50496255-50496319)


Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 3 - 242
Target Start/End: Original strand, 34458134 - 34458373
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaat 102  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| | ||||||||||||||||||| |||||||||||||||||||||    
T  34458134 aaagactttattttaagtttggcctaacctttttaaaagtctggcctgtcctattagcctgtctaaaagcctagtttacgttacgaatttcaaaaagaat 34458233  T
Q  103 atgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacaca 202  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  34458234 atgttcatcaattttgtttttcctttcaatttgtgcaacatacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacata 34458333  T
Q  203 gttgtaaaatttatagatggatagaaactcaagaataatc 242  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34458334 gttgtaaaatttatagatggatagaaactcaagaataatc 34458373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 3 - 242
Target Start/End: Complemental strand, 43138196 - 43137962
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaat 102  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||| |||| | ||| |||||||||||||| |||||| ||||||||| ||| |    
T  43138196 aaagactttattttaagtctggcctgacctttttaaaagtctggtctgaccaattagcctgtttaaaagcctagtttgtgttacaaatttcaaacagagt 43138097  T
Q  103 atgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacaca 202  Q
      ||||||||||||| ||||  ||||||||||||||||| ||||||||||| ||    | || ||||||||||||||||| |||||||||||||||||||    
T  43138096 tagttcatcaatttt-ttttcactttcaatttgtgcaacatacttaatatagag----agataaacattaattagatacatattaaactaatgaaacaca 43138002  T
Q  203 gttgtaaaatttatagatggatagaaactcaagaataatc 242  Q
     |||||||||||||||||||||| ||||||||||||||||    
T  43138001 attgtaaaatttatagatggataaaaactcaagaataatc 43137962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 9 - 242
Target Start/End: Complemental strand, 47682256 - 47682030
Alignment:
Q  9 tttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaatatgttc 108  Q
    |||||||||||| ||||||  |||||||||||||||||||||||||||||   ||||||||||||||||||||||||| ||||||||| |||||  ||||    
T  47682256 tttattttaagtctggcctggcctttttaaaagtctggtctgacctattagtctgtctaaaagcctagtttatgttacaaatttcaaacagaatcggttc 47682157  T
Q  109 atcaattttgtttttcctttcaatttgtgcaacg--tacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacacagttg 206  Q
    |||| ||   |||||||||||||||| |||||||  ||||||||||| |||||      ||||||||||||||||||||||||||||||||||||| |||    
T  47682156 atcagtt---tttttcctttcaatttatgcaacgtatacttaatatagagata------aacattaattagatacaaattaaactaatgaaacacaattg 47682066  T
Q  207 taaaatttatagatggatagaaactcaagaataatc 242  Q
    ||||||||||||||||||| ||||||||||||||||    
T  47682065 taaaatttatagatggataaaaactcaagaataatc 47682030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 3 - 242
Target Start/End: Complemental strand, 36445156 - 36444927
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaat 102  Q
    |||||||||||||||||| ||| ||  |||||||||||| ||  |||||||||||||| |||  ||||||||||||| |||||| ||||| ||| |||||    
T  36445156 aaagactttattttaagtctggtctggcctttttaaaagcctaatctgacctattaacctgttcaaaagcctagtttgtgttacaaattttaaagagaat 36445057  T
Q  103 atgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacaca 202  Q
     |||||||||||    ||||| ||||||||||||||||||||||||||||| | |||      ||||||||||||||||||||||||||||| |||||||    
T  36445056 ctgttcatcaat----ttttttctttcaatttgtgcaacgtacttaatatagatata------aacattaattagatacaaattaaactaataaaacaca 36444967  T
Q  203 gttgtaaaatttatagatggatagaaactcaagaataatc 242  Q
      ||||||||||||||||||||||||||||||||||||||    
T  36444966 agtgtaaaatttatagatggatagaaactcaagaataatc 36444927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 3 - 242
Target Start/End: Complemental strand, 31763954 - 31763721
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaat 102  Q
    |||||||||||||||||| || |||||| |||||||||||||  ||||||||| || | ||||||||||| |||||| |||||| ||||||||  ||  |    
T  31763954 aaagactttattttaagtgtgacctaacatttttaaaagtctaatctgacctactagcctgtctaaaagcttagtttgtgttacaaatttcaagcagtgt 31763855  T
Q  103 atgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacaca 202  Q
       ||||||||||||  ||| | ||||||||||||||||||||||||| || |||||||||||||      ||||||||| ||||||||||| |||||||    
T  31763854 ccattcatcaatttttctttccttttcaatttgtgcaacgtacttaatgtagagataaacattaa------ttagatacacattaaactaataaaacaca 31763761  T
Q  203 gttgtaaaatttatagatggatagaaactcaagaataatc 242  Q
     | |||||||||||||||||||||||||||||||||||||    
T  31763760 atcgtaaaatttatagatggatagaaactcaagaataatc 31763721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 3 - 242
Target Start/End: Complemental strand, 53995765 - 53995533
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaat 102  Q
    |||| ||||||||||||  || ||| |||||||||||||||||  |||||||||||   ||||||||||| ||||||||||||| ||||||||| | | |    
T  53995765 aaaggctttattttaagcctgacctgacctttttaaaagtctgacctgacctattagtctgtctaaaagcttagtttatgttacaaatttcaaacatagt 53995666  T
Q  103 atgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacaca 202  Q
     |||||||||| ||| ||| |||||||||||||| ||| ||||| |||||| |||||      ||||||||||||||| | ||||||||||||| | |||    
T  53995665 ttgttcatcaaattt-tttctcctttcaatttgtacaatgtactaaatatagagata------aacattaattagatagagattaaactaatgacaaaca 53995573  T
Q  203 gttgtaaaatttatagatggatagaaactcaagaataatc 242  Q
     ||||||||||||||||||||||||||||| |||||||||    
T  53995572 attgtaaaatttatagatggatagaaactccagaataatc 53995533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 7290751 - 7290963
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaat 102  Q
    |||||||||||||||||  || ||| |||||||||||||||||| ||||||||||| | || ||||||||||||||| |||||| ||||||||| | | |    
T  7290751 aaagactttattttaagcctgacctgacctttttaaaagtctggcctgacctattagcctgcctaaaagcctagtttgtgttacaaatttcaaacatagt 7290850  T
Q  103 atgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacaca 202  Q
    |||||| |||||||  ||| |||||||||||||||||||  |||||||||| |||||      ||||||||||||||||||| | ||||||| |||||||    
T  7290851 atgttcttcaattt--tttgtcctttcaatttgtgcaacacacttaatatagagata------aacattaattagatacaaaat-aactaataaaacaca 7290941  T
Q  203 gttgtaaaatttatagatggat 224  Q
     |||||||||||||||||||||    
T  7290942 attgtaaaatttatagatggat 7290963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 3 - 153
Target Start/End: Original strand, 23602008 - 23602155
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaat 102  Q
    |||| ||||||||||||| |||||| ||||||||||||| |||| ||||||||||| |||||||||||||||||||| |||||| ||||||||| |||||    
T  23602008 aaaggctttattttaagtctggcctgacctttttaaaagcctggcctgacctattagcttgtctaaaagcctagtttgtgttacaaatttcaaacagaat 23602107  T
Q  103 atgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatata 153  Q
    ||||||||| |||   ||||||||||||||||||||||| || ||||||||    
T  23602108 atgttcatcgatt---tttttcctttcaatttgtgcaacttagttaatata 23602155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 167
Target Start/End: Complemental strand, 47305152 - 47304991
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaat 102  Q
    |||||||||||||||||  |  ||| |||||||||||||||||  ||| ||||||| ||||||||||||||||||||||||||| |||||  || ||| |    
T  47305152 aaagactttattttaagcctaacctgacctttttaaaagtctgacctggcctattagcttgtctaaaagcctagtttatgttacaaatttttaacagagt 47305053  T
Q  103 atgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaa 167  Q
     ||||||| ||||   ||||| |||||||||| |||||||||||||||||| |||||||||||||    
T  47305052 ttgttcattaatt---ttttttctttcaatttatgcaacgtacttaatatagagataaacattaa 47304991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 30 - 241
Target Start/End: Original strand, 50689319 - 50689525
Alignment:
Q  30 cctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaatatgttcatcaattttgtttttcctttc 129  Q
    |||||| ||||| |||  ||||||||||| | |||||||||||||||||| |||||| ||||||||| ||| |    ||||| ||||| | |||| ||||    
T  50689319 ccttttcaaaagcctgacctgacctattagcctgtctaaaagcctagtttgtgttacaaatttcaaatagagttcagtcatccatttt-tctttcttttc 50689417  T
Q  130 aatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacacagttgtaaaatttatagatggatagaaa 229  Q
    ||||||||||||  ||||||| || ||| | |    |||| |||||||||||| ||||||||||| ||||||||| |||||||||| |||||||||||||    
T  50689418 aatttgtgcaacacacttaatgtagagagata----aacaataattagatacatattaaactaataaaacacagtcgtaaaatttacagatggatagaaa 50689513  T
Q  230 ctcaagaataat 241  Q
    ||||||||||||    
T  50689514 ctcaagaataat 50689525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 3 - 218
Target Start/End: Original strand, 1458376 - 1458585
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttac-gaatttcaaaaagaa 101  Q
    ||||| |||||||||||  || ||| ||||||||||||||||||||||||||||||   ||||||||||||||||||||| | |  ||||||||| |||     
T  1458376 aaagattttattttaagcctgacctgacctttttaaaagtctggtctgacctattagtctgtctaaaagcctagtttatgatgcaaaatttcaaacagag 1458475  T
Q  102 tatgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacac 201  Q
    ||||||||| || |      | |||||||||||||||||| ||||||||||| |||||      ||||||||||||||||| ||||||||||||||||||    
T  1458476 tatgttcat-aaataaaaaatccctttcaatttgtgcaacatacttaatatagagata------aacattaattagatacagattaaactaatgaaacac 1458568  T
Q  202 agttgtaaaatttatag 218  Q
    | ||||||||| |||||    
T  1458569 aattgtaaaatatatag 1458585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 73 - 241
Target Start/End: Complemental strand, 19902404 - 19902243
Alignment:
Q  73 ctagtttatgttacgaatttcaaaaagaatatgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacatta 172  Q
    ||||||| |||||| ||||| ||| | | |||||||||||||||  | |||| ||||||||| |||||| ||||||||||| |||||||||||||         
T  19902404 ctagtttgtgttacaaattttaaatatagtatgttcatcaattta-tctttcttttcaatttatgcaacatacttaatatatagataaacattaa----- 19902311  T
Q  173 attagatacaaattaaactaatgaaacacagttgtaaaatttatagatggatagaaactcaagaataat 241  Q
     ||||||| |||||||| |||| ||||| | |||||||||||||||||  |||||||| ||| ||||||    
T  19902310 -ttagatataaattaaattaataaaacataattgtaaaatttatagataaatagaaacacaacaataat 19902243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 40712087 - 40712010
Alignment:
Q  4 aagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttat 81  Q
    ||||||||||||||| | ||| || ||||||||||||||||| |||||||||||| | | | |||||||||| |||||    
T  40712087 aagactttattttaactatggtctgacctttttaaaagtctgatctgacctattagcatatgtaaaagcctaatttat 40712010  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 13611335 - 13611303
Alignment:
Q  209 aaatttatagatggatagaaactcaagaataat 241  Q
    |||||||||||||||||||||||||||||||||    
T  13611335 aaatttatagatggatagaaactcaagaataat 13611303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 52255731 - 52255676
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctatta 58  Q
    |||| |||||||||||||||||| | ||||||||||||||| |||||  |||||||    
T  52255731 aaaggctttattttaagtttggcttgacctttttaaaagtccggtctagcctatta 52255676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 43623940 - 43623902
Alignment:
Q  32 tttttaaaagtctggtctgacctattaacttgtctaaaa 70  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  43623940 tttttaaaagtctggtctgacctattagcttatctaaaa 43623902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 3 - 241
Target Start/End: Original strand, 31335350 - 31335582
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaat 102  Q
    ||||||||||||||||| |||| || |||||||||||||||| | ||||||||||| | ||||||||||| ||||||||||||| |||||| || ||| |    
T  31335350 aaagactttattttaagcttggtctgacctttttaaaagtctagcctgacctattagcctgtctaaaagcttagtttatgttacaaatttcgaacagagt 31335449  T
Q  103 atgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacaca 202  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||      ||||||||||||||||| |||||||||||||||||||    
T  31335450 atgttcatcaattttttttttcctttcaatttgtgcaacgtacttaatatagatata------aacattaattagatacatattaaactaatgaaacaca 31335543  T
Q  203 gttgtaaaatttatagatggatagaaactcaagaataat 241  Q
     || |||||||||||||||||||||||||||| ||||||    
T  31335544 attataaaatttatagatggatagaaactcaaaaataat 31335582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 3 - 241
Target Start/End: Original strand, 31303037 - 31303267
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaat 102  Q
    |||| ||||||||||| ||||| || |||||||||||||||||| || |||||||||| ||||||||| ||||||||||||||| |||||| || ||| |    
T  31303037 aaaggctttattttaaatttggtctgacctttttaaaagtctggcctaacctattaacctgtctaaaaacctagtttatgttacaaatttcgaacagagt 31303136  T
Q  103 atgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacaca 202  Q
    ||||||||||||||  ||||||||||||||||||||||| ||||||||||| |||||      ||||||||||||||||| |||||||||||||||||||    
T  31303137 atgttcatcaattt--tttttcctttcaatttgtgcaacatacttaatatagagata------aacattaattagatacagattaaactaatgaaacaca 31303228  T
Q  203 gttgtaaaatttatagatggatagaaactcaagaataat 241  Q
     || | |||||||||||||||||||||||||| ||||||    
T  31303229 attatcaaatttatagatggatagaaactcaaaaataat 31303267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 3 - 242
Target Start/End: Original strand, 10541530 - 10541760
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaat 102  Q
    |||| ||||||||||| | |||||| ||||||||||||||| ||  |||||||||| | |||||||||||||||||  |||||| ||||||||| ||| |    
T  10541530 aaaggctttattttaattctggcctgacctttttaaaagtcaggcatgacctattagcctgtctaaaagcctagttagtgttacaaatttcaaacagagt 10541629  T
Q  103 atgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacaca 202  Q
     ||||||||||||||   ||  ||||||||||||||||||||||||||||| | ||      |||||||||||||||||| |||||||||||||||||||    
T  10541630 ttgttcatcaatttt---ttcactttcaatttgtgcaacgtacttaatatagaaat------taacattaattagatacatattaaactaatgaaacaca 10541720  T
Q  203 gttgtaaaatttatagatggatagaaactcaagaataatc 242  Q
     |||||||||||||||||||||||||||||||||||||||    
T  10541721 attgtaaaatttatagatggatagaaactcaagaataatc 10541760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 39 - 242
Target Start/End: Complemental strand, 40897527 - 40897330
Alignment:
Q  39 aagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaatatgttcatcaattttgtttttcctttcaatttgtgc 138  Q
    ||||||| ||||||||||||   |||||||||||||| |||||||||| ||||||||| ||| |||||||||||||||| ||||||||||||||||||||    
T  40897527 aagtctgttctgacctattagtctgtctaaaagcctaatttatgttacaaatttcaaacagagtatgttcatcaattttttttttcctttcaatttgtgc 40897428  T
Q  139 aacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacacagttgtaaaatttatagatggatagaaactcaagaat 238  Q
    || |||||||||||| |||||||||      ||||||||||||| |||||  |||||||||||| |||||||||||||||| ||||||||||||||||||    
T  40897427 aatgtacttaatatagagataaaca------ttaattagatacagattaagttaatgaaacacaattgtaaaatttatagacggatagaaactcaagaat 40897334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 34583470 - 34583257
Alignment:
Q  21 ttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaatatgttcatcaattttgtt 120  Q
    |||||||  |||||||||||| ||||  || ||||||| | |||||||||||||||||| | |||| ||||||||| ||| | ||||||||||||||  |    
T  34583470 ttggcctggcctttttaaaagcctggcttggcctattagcctgtctaaaagcctagtttgtcttacaaatttcaaatagagtctgttcatcaatttt--t 34583373  T
Q  121 tttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacacagttgtaaaatttatagat 220  Q
    | |||||||||||||||||||||||||||||||||||||      || |||||||||||||||||||||||||| ||||||| ||||||||| |||||||    
T  34583372 tctcctttcaatttgtgcaacgtacttaatataaagata------aatattaattagatacaaattaaactaataaaacacaattgtaaaatgtatagat 34583279  T
Q  221 ggatagaaactcaagaataatc 242  Q
    || |||||||||||||||||||    
T  34583278 gggtagaaactcaagaataatc 34583257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 242
Target Start/End: Original strand, 31223680 - 31223913
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaa--aagcctagtttatgttacgaatttcaaaaaga 100  Q
    |||||||||||||||   ||||| | ||||||||||||||||||  |||||||||| | |||||||  |||||||||||||| ||| ||||||||| |||    
T  31223680 aaagactttattttagtattggcatgacctttttaaaagtctggcatgacctattagcctgtctaataaagcctagtttatgctacaaatttcaaagaga 31223779  T
Q  101 atatgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagat--acaaattaaactaatgaaa 198  Q
     | |||||||||||||| ||    ||||||||||||||||| |||||||||||||||||      ||||||||||||||    |||||| ||||||||||    
T  31223780 gtttgttcatcaattttttt----ctttcaatttgtgcaacatacttaatataaagata------aacattaattagattgcaaaattatactaatgaaa 31223869  T
Q  199 cacagttgtaaaatttatagatggatagaaactcaagaataatc 242  Q
    |||| || ||||||||||||||||||||||||||||||||||||    
T  31223870 cacaattataaaatttatagatggatagaaactcaagaataatc 31223913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 66 - 242
Target Start/End: Original strand, 5926727 - 5926896
Alignment:
Q  66 taaaagcctagtttatgttacgaatttcaaaaagaatatgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacatt 165  Q
    |||||| ||||||| |||||| ||||||||| ||| ||||||||||||||||  |||   ||| | ||||||||||||||| ||||||||||||||||      
T  5926727 taaaagtctagtttgtgttacaaatttcaaacagagtatgttcatcaattttcatttatttttta-tttgtgcaacgtactaaatataaagataaaca-- 5926823  T
Q  166 aacattaattagatacaaattaaactaatgaaacacagttgtaaaatttatagatggatagaaactcaagaataatc 242  Q
        ||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||| | |||||||||||||||    
T  5926824 ----ttaattagatacaaattaaactaataaaaaacaattgtaaaatttatagatggattggaactcaagaataatc 5926896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 242
Target Start/End: Original strand, 12621325 - 12621557
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaat 102  Q
    |||| ||||||||||||| |||  |  ||||||||||||||||  |||||||||||   | | |||||||||||||| | |||| ||||||||| | | |    
T  12621325 aaaggctttattttaagtctggtttggcctttttaaaagtctgacctgacctattagtctttttaaaagcctagtttgtattacaaatttcaaacacagt 12621424  T
Q  103 atgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacaca 202  Q
     | ||||||||      ||| | ||||||||||||| || ||||||||||| |||||||||      ||||||||||||||||||||||||| ||| |||    
T  12621425 cttttcatcaaaaaaaattt-cttttcaatttgtgcgacatacttaatatagagataaaca------ttaattagatacaaattaaactaataaaataca 12621517  T
Q  203 gttgtaaaatttatagatggatagaaactcaagaataatc 242  Q
     |||||||||||||||||||||||||||||||||||||||    
T  12621518 attgtaaaatttatagatggatagaaactcaagaataatc 12621557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 230
Target Start/End: Complemental strand, 28376586 - 28376498
Alignment:
Q  136 tgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacacagttgtaaaatttatagatggatagaaac 230  Q
    |||||||||||||||||| |||||||||||||      ||| || || |||||| |||| ||||| | |||||||||||||||||||||| ||||    
T  28376586 tgcaacgtacttaatatatagataaacattaa------ttaaatgcagattaaattaataaaacataattgtaaaatttatagatggataaaaac 28376498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 5926698 - 5926735
Alignment:
Q  7 actttattttaagtttggcctaacctttttaaaagtct 44  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  5926698 actttattttaagtttggcctgaccttattaaaagtct 5926735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 10 - 242
Target Start/End: Original strand, 9458709 - 9458935
Alignment:
Q  10 ttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaatatgttca 109  Q
    |||||||||| ||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  9458709 ttattttaagcttggcctgacctttttaaaagtctggcctgacctattagcttgtctaaaagcctagtttatgttacaaatttcaaaaagagtatgttca 9458808  T
Q  110 tcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacacagttgtaa 209  Q
    | ||      | |||||||||||||||||||||||||||||||| | |||      ||||||||||||||||||||||||||||||||||||| ||||||    
T  9458809 taaaaaaaaatattcctttcaatttgtgcaacgtacttaatatagatata------aacattaattagatacaaattaaactaatgaaacacaattgtaa 9458902  T
Q  210 aatttatagatggatagaaactcaagaataatc 242  Q
    ||||||||||||||| |||||||||||||||||    
T  9458903 aatttatagatggatggaaactcaagaataatc 9458935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 8 - 242
Target Start/End: Original strand, 26425196 - 26425423
Alignment:
Q  8 ctttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaatatgtt 107  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||| | |||||||||| || |||| |||||| ||||||||| ||| |   ||    
T  26425196 ctttattttaagtttgacctgacctttttaaaagtctggtctgacctattagcctgtctaaaagtcttgtttgtgttacaaatttcaaatagagtccatt 26425295  T
Q  108 catcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacacagttgt 207  Q
    |||| ||||| | |||| ||||||||||||||||||||||||| |  |||||      ||||||||||||||||||||| ||||||| ||||||  | ||    
T  26425296 catccatttt-tatttcttttcaatttgtgcaacgtacttaatgttgagata------aacattaattagatacaaattcaactaataaaacacgatcgt 26425388  T
Q  208 aaaatttatagatggatagaaactcaagaataatc 242  Q
    |||||||||||||||||||||||||||||||||||    
T  26425389 aaaatttatagatggatagaaactcaagaataatc 26425423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 3 - 239
Target Start/End: Complemental strand, 5734423 - 5734192
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaat 102  Q
    |||| ||||||||||||  | |||  |||||||||||| ||||||||  ||||||| | |||||||||||||||||||| |||| ||||||||| | |||    
T  5734423 aaaggctttattttaagccttgccagacctttttaaaaatctggtctagcctattagcatgtctaaaagcctagtttatattacaaatttcaaacaaaat 5734324  T
Q  103 atgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacaca 202  Q
    |||||||||| |||| | ||  |||||||||||| ||| ||||||||||   | ||| | || ||||||||| ||||||| ||||||||||||||||| |    
T  5734323 atgttcatcatttttttgtt--ctttcaatttgtacaatgtacttaata---atatagagataaacattaatcagatacagattaaactaatgaaacata 5734229  T
Q  203 gttgtaaaatttatagatggatagaaactcaagaata 239  Q
     |||||||||||||||||| |||||||||||||||||    
T  5734228 attgtaaaatttatagatgtatagaaactcaagaata 5734192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 231
Target Start/End: Complemental strand, 3526151 - 3525930
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaat 102  Q
    ||||||||||||||||||||| ||| | ||||||||||||||| ||| ||||||||| ||||||||||| | ||||| |||||  ||||||||| ||| |    
T  3526151 aaagactttattttaagtttgacctgatctttttaaaagtctgttctaacctattaatttgtctaaaagtcaagtttttgttataaatttcaaatagagt 3526052  T
Q  103 atgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacaca 202  Q
       |||||||||||| | |||| ||| |||||| |||||||| |||||||| ||      || ||||||||||||||||| ||||||||||| |||||||    
T  3526051 tcattcatcaatttt-tctttctttttaatttgagcaacgtatttaatatagag------atcaacattaattagatacatattaaactaataaaacaca 3525959  T
Q  203 gttgtaaaatttatagatggatagaaact 231  Q
     |  ||||||||| ||||| |||||||||    
T  3525958 atcataaaatttacagatgaatagaaact 3525930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 21523687 - 21523921
Alignment:
Q  1 ttaaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaaga 100  Q
    |||||| ||||||||||||| ||| || | |||||||||||| |||  ||||||| || | | |||||| | ||||||| |||||| ||||| ||| | |    
T  21523687 ttaaaggctttattttaagtctggtctgatctttttaaaagtttggcatgacctactagcctatctaaatgtctagtttgtgttacaaattttaaataaa 21523786  T
Q  101 atatgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaaca 200  Q
     | | |||||| ||||| | |||| | |||||||||| ||||| |||||| || ||||||||||| |      ||||||||| ||||||| ||| |||||    
T  21523787 gtctattcatccatttt-tctttcttctcaatttgtgtaacgtgcttaatgtagagataaacattta------ttagatacacattaaacaaataaaaca 21523879  T
Q  201 cagttgtaaaatttatagatggatagaaactcaagaataatc 242  Q
    || | |||||||||||||||| ||||||||||||||||||||    
T  21523880 caatcgtaaaatttatagatgaatagaaactcaagaataatc 21523921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 4920252 - 4920138
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaat 102  Q
    |||||||||||||||||| |||||| |||||||||||||||||  ||||| ||||| | |||||||||| ||||||| |||||| ||||||||| | |||    
T  4920252 aaagactttattttaagtctggcctgacctttttaaaagtctgacctgacttattagcctgtctaaaagtctagtttgtgttacaaatttcaaacataat 4920153  T
Q  103 atgttcatcaatttt 117  Q
      |||||||||||||    
T  4920152 tggttcatcaatttt 4920138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 167
Target Start/End: Original strand, 12217982 - 12218096
Alignment:
Q  53 ctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaatatgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatat 152  Q
    |||||| | ||| ||||| |||||||| |||||| ||||| ||| ||| ||||||||| ||||||  |||| |||||||||| |||||||||||||||||    
T  12217982 ctattagcctgtttaaaaacctagtttgtgttacaaattttaaatagagtatgttcataaatttttgttttactttcaatttatgcaacgtacttaatat 12218081  T
Q  153 aaagataaacattaa 167  Q
    | |||||||||||||    
T  12218082 agagataaacattaa 12218096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 167
Target Start/End: Complemental strand, 27157707 - 27157550
Alignment:
Q  9 tttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaatatgttc 108  Q
    |||||||||||| || | | |||||||||||| | ||  ||||||||||| | ||| |||||| ||||||| |||||| ||||||||| |||||   |||    
T  27157707 tttattttaagtctgacttgacctttttaaaaatttgtcctgacctattagcatgtttaaaagtctagtttgtgttacaaatttcaaatagaatccattc 27157608  T
Q  109 atcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaa 167  Q
    ||| ||||| | |||| |||||||||||||||| || |||||  | |||||||||||||    
T  27157607 atccatttt-tctttcttttcaatttgtgcaacataattaatgcagagataaacattaa 27157550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 241
Target Start/End: Original strand, 9625911 - 9625943
Alignment:
Q  209 aaatttatagatggatagaaactcaagaataat 241  Q
    |||||||||||||||||||||||||||||||||    
T  9625911 aaatttatagatggatagaaactcaagaataat 9625943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 31932676 - 31932740
Alignment:
Q  11 tattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagccta 75  Q
    ||||||||  ||| ||| ||||||||||||||| ||||| |||||||| |||||||||| |||||    
T  31932676 tattttaaacttgacctcacctttttaaaagtccggtctaacctattagcttgtctaaatgccta 31932740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 7e-64; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 41534965 - 41534738
Alignment:
Q  8 ctttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaatatgtt 107  Q
    ||||||||||||  | |||| |||||||||||||||||||||||||||||| | | ||||||| ||||||||| ||||| ||||||||| ||| ||||||    
T  41534965 ctttattttaagcctagcctgacctttttaaaagtctggtctgacctattagcctatctaaaaacctagtttaagttacaaatttcaaacagagtatgtt 41534866  T
Q  108 catcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacacagttgt 207  Q
    |||| ||||| |||| | ||||||||||||||| ||||||||||||  ||||      ||||||||||||||||||||||||||||| ||||||| ||||    
T  41534865 catc-atttttttttccgtttcaatttgtgcaatgtacttaatatagtgata------aacattaattagatacaaattaaactaataaaacacaattgt 41534773  T
Q  208 aaaatttatagatggatagaaactcaagaataatc 242  Q
    |||||||||||||||||||||||||||||||||||    
T  41534772 aaaatttatagatggatagaaactcaagaataatc 41534738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 3 - 241
Target Start/End: Complemental strand, 40356130 - 40355901
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaat 102  Q
    |||||||||||||||||  || ||| |||||||||||||||||||||||| |||||   |||||||||||||| |||||||||| ||||||||| ||| |    
T  40356130 aaagactttattttaagcatgacctgacctttttaaaagtctggtctgacatattagtctgtctaaaagcctaatttatgttacaaatttcaaacagagt 40356031  T
Q  103 atgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacaca 202  Q
    |||||||||||||   ||||||||||| ||||||||||| ||||||||||| |||||      ||||||||||| ||||| ||||| |||||||||||||    
T  40356030 atgttcatcaatt---tttttcctttccatttgtgcaacatacttaatatagagata------aacattaattatatacagattaagctaatgaaacaca 40355940  T
Q  203 gttgtaaaatttatagatggatagaaactcaagaataat 241  Q
      ||||||| |||||||||||||||||||||||||||||    
T  40355939 actgtaaaaattatagatggatagaaactcaagaataat 40355901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 3 - 242
Target Start/End: Complemental strand, 15440742 - 15440511
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaat 102  Q
    ||||||||||||||||||  ||||| |||||||||||||||| ||||| ||||||| | |||||||||||||||||| |||||| ||||| ||| ||| |    
T  15440742 aaagactttattttaagtccggcctgacctttttaaaagtctagtctggcctattagcatgtctaaaagcctagtttgtgttacaaattttaaatagagt 15440643  T
Q  103 atgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacaca 202  Q
       ||||||||||||||||||| ||| ||  |||||||||||||||||||| |||||      |||||| |||||||||||||||||||||| |||||||    
T  15440642 tctttcatcaattttgtttttctttttaa-ctgtgcaacgtacttaatatagagata------aacattgattagatacaaattaaactaataaaacaca 15440550  T
Q  203 gttgtaaaatttatagatggatagaaactcaagaataatc 242  Q
     ||  |||||||||||||||||||||||||||||||||||    
T  15440549 att-aaaaatttatagatggatagaaactcaagaataatc 15440511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 3 - 242
Target Start/End: Original strand, 5305488 - 5305720
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaat 102  Q
    |||| ||||||||||||  || |||  |||||||||||| |||||||||||||||| | | |||||||| || |||| |||||| ||||||||| ||| |    
T  5305488 aaaggctttattttaagcctgacctggcctttttaaaagcctggtctgacctattagcctatctaaaagtcttgtttgtgttacaaatttcaaatagagt 5305587  T
Q  103 atgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacaca 202  Q
       |||||| ||||| | |||| |||||||||||| |||||||||||| || |||||      ||||||||||||||||||||||||||||| |||||||    
T  5305588 ccattcatccatttt-tatttcttttcaatttgtggaacgtacttaatgtagagata------aacattaattagatacaaattaaactaataaaacaca 5305680  T
Q  203 gttgtaaaatttatagatggatagaaactcaagaataatc 242  Q
     | ||||||||||||||| ||||| |||||||||||||||    
T  5305681 atcgtaaaatttatagattgataggaactcaagaataatc 5305720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 12068568 - 12068779
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaat 102  Q
    |||| ||||||||||||| |||| |  ||||||||||||| ||||||||||||||| | || ||||||  ||||||| |||||| ||||||||| | | |    
T  12068568 aaaggctttattttaagtctggcttggcctttttaaaagtatggtctgacctattagcctgactaaaaatctagtttgtgttacaaatttcaaacaaagt 12068667  T
Q  103 atgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacaca 202  Q
     | |||||||| ||| |||||||||||||||||| |||  ||||||||||||||| |      ||||||||||||||||||||||||||||| ||||| |    
T  12068668 cttttcatcaaattt-tttttcctttcaatttgtacaatatacttaatataaagaca------aacattaattagatacaaattaaactaataaaacaga 12068760  T
Q  203 gttgtaaaatttatagatg 221  Q
     ||||||||||||| ||||    
T  12068761 attgtaaaatttattgatg 12068779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 202
Target Start/End: Original strand, 30487705 - 30487892
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaat 102  Q
    |||||||||||||||||  ||| || |||||||||||||||| ||||     |||| | ||||||||||||||||||  ||||  ||||||||| ||| |    
T  30487705 aaagactttattttaagcctggtctgacctttttaaaagtctagtct-----attagcctgtctaaaagcctagtttgagttataaatttcaaacagagt 30487799  T
Q  103 atgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacaca 202  Q
     ||||||||| |||| ||||||||||||||||||||||| ||||||||||| |||||      |||| |||||||||||||||||||||||| |||||||    
T  30487800 ttgttcatcattttt-tttttcctttcaatttgtgcaacatacttaatatatagata------aacactaattagatacaaattaaactaataaaacaca 30487892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 202
Target Start/End: Complemental strand, 38855673 - 38855482
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaat 102  Q
    |||| ||||||||||||  ||||||  |||||||||||| || | ||| ||||||| | |||||||||||||||||| |||||| ||||||||| ||| |    
T  38855673 aaaggctttattttaagcatggcctggcctttttaaaagcctagcctggcctattagcctgtctaaaagcctagtttgtgttacaaatttcaaacagatt 38855574  T
Q  103 atgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacaca 202  Q
    || |||||| |  |  ||||| ||||||||||||||||||||||||||||  |||||      ||||||||||||||||||||||||| ||| |||||||    
T  38855573 atattcatcgaaat--ttttttctttcaatttgtgcaacgtacttaatatggagata------aacattaattagatacaaattaaaccaataaaacaca 38855482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 167
Target Start/End: Complemental strand, 42472554 - 42472396
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaat 102  Q
    |||| ||||||||||||  || ||| ||||||||||||| || |     ||||||| | |||||||||||||||||| |||||| ||||||||| |||      
T  42472554 aaaggctttattttaagcatgacctgacctttttaaaagcctag-----cctattagcctgtctaaaagcctagtttgtgttacaaatttcaaatagaga 42472460  T
Q  103 atgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaa 167  Q
       |||||| ||||| | |||| |||||||||||||||| |||||||||||||||||||||||||    
T  42472459 ccattcatccatttt-tctttcttttcaatttgtgcaacatacttaatataaagataaacattaa 42472396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 110
Target Start/End: Original strand, 34639816 - 34639923
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaat 102  Q
    |||||||||||||||||| |||||| ||||||||||||| |||  |||  |||||| | ||||||||||  |||||| |||||||||||||||| ||| |    
T  34639816 aaagactttattttaagtctggcctgacctttttaaaagcctgacctggactattagcctgtctaaaagtttagtttgtgttacgaatttcaaagagagt 34639915  T
Q  103 atgttcat 110  Q
    ||||||||    
T  34639916 atgttcat 34639923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 19089935 - 19090007
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagccta 75  Q
    ||||||||||||||||| |||| || ||||||||||||| |||   |||||||||| | ||||||||||||||    
T  19089935 aaagactttattttaagcttggtctgacctttttaaaagcctgacttgacctattagcctgtctaaaagccta 19090007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 34639965 - 34640021
Alignment:
Q  175 tagatacaaattaaactaatgaaacacagttgtaaaatttatagatggatagaaact 231  Q
    |||| ||||||||||||||| || |||| |||||||||||||||||||||| |||||    
T  34639965 tagagacaaattaaactaataaatcacaattgtaaaatttatagatggatataaact 34640021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 117
Target Start/End: Original strand, 38119568 - 38119676
Alignment:
Q  9 tttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaatatgttc 108  Q
    |||||||||||  || ||| |||||||||||||  |||||||  ||||||   |||||||||| ||||||| |||||| ||||||||| | | | |||||    
T  38119568 tttattttaagcctgacctgacctttttaaaagcatggtctggtctattagtctgtctaaaagtctagtttgtgttacaaatttcaaacaaagtttgttc 38119667  T
Q  109 atcaatttt 117  Q
    |||||||||    
T  38119668 atcaatttt 38119676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 42472353 - 42472289
Alignment:
Q  178 atacaaattaaactaatgaaacacagttgtaaaatttatagatggatagaaactcaagaataatc 242  Q
    ||||| ||||||||||| ||||||| | | | |||||||||||| ||||||||||||||||||||    
T  42472353 atacacattaaactaataaaacacaatcgcataatttatagatgtatagaaactcaagaataatc 42472289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 45571311 - 45571235
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagttt 79  Q
    ||||||||||||||||||||||  | ||||||| |||||||||   | |||||||| | ||||||||||| ||||||    
T  45571311 aaagactttattttaagtttggtttgaccttttaaaaagtctgacataacctattagcatgtctaaaagcttagttt 45571235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 45574978 - 45574902
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagttt 79  Q
    ||||||||||||||||||||||  | ||||||| |||||||||   | |||||||| | ||||||||||| ||||||    
T  45574978 aaagactttattttaagtttggtttgaccttttaaaaagtctgacataacctattagcatgtctaaaagcttagttt 45574902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 45578645 - 45578569
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagttt 79  Q
    ||||||||||||||||||||||  | ||||||| |||||||||   | |||||||| | ||||||||||| ||||||    
T  45578645 aaagactttattttaagtttggtttgaccttttaaaaagtctgacataacctattagcatgtctaaaagcttagttt 45578569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 45582312 - 45582236
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagttt 79  Q
    ||||||||||||||||||||||  | ||||||| |||||||||   | |||||||| | ||||||||||| ||||||    
T  45582312 aaagactttattttaagtttggtttgaccttttaaaaagtctgacataacctattagcatgtctaaaagcttagttt 45582236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 45585979 - 45585903
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagttt 79  Q
    ||||||||||||||||||||||  | ||||||| |||||||||   | |||||||| | ||||||||||| ||||||    
T  45585979 aaagactttattttaagtttggtttgaccttttaaaaagtctgacataacctattagcatgtctaaaagcttagttt 45585903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 45589646 - 45589570
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagttt 79  Q
    ||||||||||||||||||||||  | ||||||| |||||||||   | |||||||| | ||||||||||| ||||||    
T  45589646 aaagactttattttaagtttggtttgaccttttaaaaagtctgacataacctattagcatgtctaaaagcttagttt 45589570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 45593313 - 45593237
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagttt 79  Q
    ||||||||||||||||||||||  | ||||||| |||||||||   | |||||||| | ||||||||||| ||||||    
T  45593313 aaagactttattttaagtttggtttgaccttttaaaaagtctgacataacctattagcatgtctaaaagcttagttt 45593237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 45596980 - 45596904
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagttt 79  Q
    ||||||||||||||||||||||  | ||||||| |||||||||   | |||||||| | ||||||||||| ||||||    
T  45596980 aaagactttattttaagtttggtttgaccttttaaaaagtctgacataacctattagcatgtctaaaagcttagttt 45596904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 45600647 - 45600571
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagttt 79  Q
    ||||||||||||||||||||||  | ||||||| |||||||||   | |||||||| | ||||||||||| ||||||    
T  45600647 aaagactttattttaagtttggtttgaccttttaaaaagtctgacataacctattagcatgtctaaaagcttagttt 45600571  T

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Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 45604314 - 45604238
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagttt 79  Q
    ||||||||||||||||||||||  | ||||||| |||||||||   | |||||||| | ||||||||||| ||||||    
T  45604314 aaagactttattttaagtttggtttgaccttttaaaaagtctgacataacctattagcatgtctaaaagcttagttt 45604238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 45607981 - 45607905
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagttt 79  Q
    ||||||||||||||||||||||  | ||||||| |||||||||   | |||||||| | ||||||||||| ||||||    
T  45607981 aaagactttattttaagtttggtttgaccttttaaaaagtctgacataacctattagcatgtctaaaagcttagttt 45607905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 45611648 - 45611572
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagttt 79  Q
    ||||||||||||||||||||||  | ||||||| |||||||||   | |||||||| | ||||||||||| ||||||    
T  45611648 aaagactttattttaagtttggtttgaccttttaaaaagtctgacataacctattagcatgtctaaaagcttagttt 45611572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 45615315 - 45615239
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagttt 79  Q
    ||||||||||||||||||||||  | ||||||| |||||||||   | |||||||| | ||||||||||| ||||||    
T  45615315 aaagactttattttaagtttggtttgaccttttaaaaagtctgacataacctattagcatgtctaaaagcttagttt 45615239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 16400333 - 16400237
Alignment:
Q  7 actttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaatat 104  Q
    |||||||||||||| ||  || |||||||| |||||||||| ||| |||| ||||| |||||||| ||||||| |  ||  ||||||||| |||||||    
T  16400333 actttattttaagtctgatctgaccttttt-aaagtctggtttgatctataaacttatctaaaagtctagtttgtactaataatttcaaatagaatat 16400237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 9 - 242
Target Start/End: Original strand, 692903 - 693126
Alignment:
Q  9 tttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaatatgttc 108  Q
    |||||||||||| |||||| ||||||||||||||||||| |||||||||| | ||| |||||| || || | |||||| ||||||||| ||| |  ||||    
T  692903 tttattttaagtctggcctgacctttttaaaagtctggtatgacctattagcctgtttaaaagtctggtctgtgttacaaatttcaaacagagtccgttc 693002  T
Q  109 atcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacacagttgta 208  Q
    ||||||    ||||| ||||||||||||||||||||||||||||| || ||      |||||||||||||||||||||||| |||| ||||||| |||||    
T  693003 atcaat----ttttttctttcaatttgtgcaacgtacttaatatagaggta------aacattaattagatacaaattaaattaataaaacacaattgta 693092  T
Q  209 aaatttatagatggatagaaactcaagaataatc 242  Q
    ||||||||||||||||||||||||||||||||||    
T  693093 aaatttatagatggatagaaactcaagaataatc 693126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 7 - 242
Target Start/End: Complemental strand, 22293470 - 22293242
Alignment:
Q  7 actttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaatatgt 106  Q
    ||||||||||||||||||||| |||||||||||||  ||||||  ||||||| | |||||||||| ||||||| |||||| ||||||||| ||| | | |    
T  22293470 actttattttaagtttggcctgacctttttaaaagcttggtctagcctattagcctgtctaaaagtctagtttgtgttacaaatttcaaatagagtttat 22293371  T
Q  107 tcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacacagttg 206  Q
    ||||| ||||| | |||| |||||||||| |||| ||||||||| || |||||      ||||||||||||||||||||||||||||| ||  ||| | |    
T  22293370 tcatccatttt-tctttcttttcaatttgagcaaggtacttaatgtagagata------aacattaattagatacaaattaaactaataaagtacaatcg 22293278  T
Q  207 taaaatttatagatggatagaaactcaagaataatc 242  Q
    ||||||||| ||||||||||||||||||||||||||    
T  22293277 taaaatttaaagatggatagaaactcaagaataatc 22293242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 30 - 239
Target Start/End: Complemental strand, 22300443 - 22300241
Alignment:
Q  30 cctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaatatgttcatcaattttgtttttcctttc 129  Q
    ||||||||||||  ||| ||  ||||||| | | |||||||||||||||| |||||| ||||||||| ||| | | |||||| ||||| | |||| ||||    
T  22300443 cctttttaaaagcttggcctagcctattagcctatctaaaagcctagtttgtgttacaaatttcaaatagagtctattcatccatttt-tctttcttttc 22300345  T
Q  130 aatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacacagttgtaaaatttatagatggatagaaa 229  Q
    ||||||||||| ||||||||| || |||||||||||||      ||||||||||||||||| ||| || |||| | |||||||||| |||||||||||||    
T  22300344 aatttgtgcaaggtacttaatgtagagataaacattaa------ttagatacaaattaaaccaataaagcacaatcgtaaaatttaaagatggatagaaa 22300251  T
Q  230 ctcaagaata 239  Q
    ||||||||||    
T  22300250 ctcaagaata 22300241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 202
Target Start/End: Complemental strand, 16166757 - 16166570
Alignment:
Q  8 ctttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaatatgtt 107  Q
    ||||||||||||  || |||  |||||||||||| || |  || ||||||| | |||||||||||||||||| |||||  ||||||||| ||| | |  |    
T  16166757 ctttattttaagcctgacctggcctttttaaaagcctagcatggcctattagcctgtctaaaagcctagtttgtgttataaatttcaaacagagtttact 16166658  T
Q  108 catcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacaca 202  Q
    |||||| ||| ||||||||||||||||||||||| ||||||||||| |||||||||      ||||||||||||||||||||||||| |||||||    
T  16166657 catcaacttt-tttttcctttcaatttgtgcaacatacttaatatagagataaaca------ttaattagatacaaattaaactaataaaacaca 16166570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 121 - 239
Target Start/End: Original strand, 15055452 - 15055564
Alignment:
Q  121 tttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacacagttgtaaaatttatagat 220  Q
    |||| ||||||||||| |||| |||||||| || |||||||||      ||||||| ||||| |||||| |||| ||||||| | |||||||||||||||    
T  15055452 tttcttttcaatttgtacaacatacttaatgtagagataaaca------ttaattaaatacacattaaattaataaaacacaatcgtaaaatttatagat 15055545  T
Q  221 ggatagaaactcaagaata 239  Q
    |||||||||||||||||||    
T  15055546 ggatagaaactcaagaata 15055564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 6139029 - 6138948
Alignment:
Q  161 acattaacattaattagatacaaattaaactaatgaaacacagttgtaaaatttatagatggatagaaactcaagaataatc 242  Q
    |||| ||||||||||||||||| ||| ||||||| ||||||| | |||||||| || |||||||||||||||||||||||||    
T  6139029 acataaacattaattagatacacatttaactaataaaacacaatcgtaaaattgatggatggatagaaactcaagaataatc 6138948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 16464169 - 16464076
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaa 96  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||   ||||||   ||||||||||| |||||| |||||| |||||||||    
T  16464169 aaagactttatattaagtttggcctaacctttttaaaagtttggtctagtctattagtctgtctaaaagcttagtttgtgttacaaatttcaaa 16464076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 16464043 - 16463973
Alignment:
Q  172 aattagatacaaattaaactaatgaaacacagttgtaaaatttatagatggatagaaactcaagaataatc 242  Q
    ||||||||||| ||||||||||| ||||||| | |||||||||||||||| ||| |||| ||||| |||||    
T  16464043 aattagatacacattaaactaataaaacacaatcgtaaaatttatagatgaatataaacacaagagtaatc 16463973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 15973499 - 15973577
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttat 81  Q
    |||||||||||||||||| || | ||||||||||||| ||| |    ||||||||||| |||||||||||||| |||||    
T  15973499 aaagactttattttaagtctgccataacctttttaaatgtcggacaagacctattaacgtgtctaaaagcctaatttat 15973577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 6139133 - 6139076
Alignment:
Q  39 aagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaa 96  Q
    |||| ||| ||||| ||||| | ||||||||||||||||||||||||| |||||||||    
T  6139133 aagtttggcctgacatattagcctgtctaaaagcctagtttatgttacaaatttcaaa 6139076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 47 - 238
Target Start/End: Original strand, 51126680 - 51126862
Alignment:
Q  47 tctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaatatgttcatcaattttgtttttcctttcaatttgtgcaacgtact 146  Q
    |||||||||||| | ||||||||||| ||||||||||||| ||||||||| ||| | ||||||||||||||   ||||||||||||||||||||||||||    
T  51126680 tctgacctattagcctgtctaaaagcttagtttatgttacaaatttcaaatagagtttgttcatcaatttt---tttcctttcaatttgtgcaacgtact 51126776  T
Q  147 taatataaagataaacattaacattaattagatacaaattaaactaatgaaacacagttgtaaaatttatagatggatagaaactcaagaat 238  Q
    ||||||| |||||      |||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  51126777 taatatagagata------aacattaattagatacaggttaaactaatgaaacacagttgtaaaatgtatagatggatataaactcaagaat 51126862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 40708335 - 40708151
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaat 102  Q
    |||| ||||||||||||  |||||| |||||||||||||||||| ||||||||||||| ||||||||||| |||||| |||||| ||||| ||| ||| |    
T  40708335 aaaggctttattttaagcctggcctgacctttttaaaagtctggcctgacctattaacctgtctaaaagcgtagtttgtgttacaaattttaaacagagt 40708236  T
Q  103 atgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaat 194  Q
     ||||||| |||||| ||||| |||||||||| |||||||||||||||||| |||||      |||||||||||||||||||||||||||||    
T  40708235 ttgttcattaatttt-ttttttctttcaatttatgcaacgtacttaatatagagata------aacattaattagatacaaattaaactaat 40708151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 239
Target Start/End: Original strand, 35361903 - 35362132
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaat 102  Q
    |||||||||||||||||| ||| ||  |||||||||||||||||||||  |||||| | ||||||||| |||||||| |||||| |||||| || ||| |    
T  35361903 aaagactttattttaagtatggtctggcctttttaaaagtctggtctggtctattagcctgtctaaaaccctagtttgtgttacaaatttctaacagagt 35362002  T
Q  103 atgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacaca 202  Q
       |||||| ||||| | |||| |||||||||||||||| |||||||| || |||||      ||||||| ||||||||| ||||||||||| |||||||    
T  35362003 cgattcatccatttt-tctttcttttcaatttgtgcaacatacttaatgtagagata------aacattagttagatacacattaaactaataaaacaca 35362095  T
Q  203 gttgtaaaatttatagatggatagaaactcaagaata 239  Q
     | |||||||||||| ||||||| |||||||||||||    
T  35362096 atcgtaaaatttatatatggatataaactcaagaata 35362132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 202
Target Start/End: Original strand, 3289109 - 3289302
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaat 102  Q
    |||||||||||||||||  || |||| ||||||||||||  |||  |||||||||| | ||| |||||| ||||||| |||||  ||||||||| ||| |    
T  3289109 aaagactttattttaagcctgacctagcctttttaaaagcttggcatgacctattagcctgtttaaaagtctagtttgtgttagaaatttcaaacagagt 3289208  T
Q  103 atgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacaca 202  Q
    ||||||||| ||||  |||||||||||||||||||||| |||||||||||| |||||      ||||||||||||||||||||||||| ||| |||||||    
T  3289209 atgttcatcgatttattttttcctttcaatttgtgcaatgtacttaatatagagata------aacattaattagatacaaattaaaccaataaaacaca 3289302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 30 - 239
Target Start/End: Original strand, 13640833 - 13641035
Alignment:
Q  30 cctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaatatgttcatcaattttgtttttcctttc 129  Q
    ||||||||||||  ||| ||  ||||||| | | |||||||||||||||| |||||| ||||||||| ||| | | |||||| ||||| | |||| ||||    
T  13640833 cctttttaaaagcttggcctagcctattagcctatctaaaagcctagtttgtgttacaaatttcaaatagagtctattcatccatttt-tctttcttttc 13640931  T
Q  130 aatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacacagttgtaaaatttatagatggatagaaa 229  Q
    ||||||||||| ||||||||| || |||||      ||||||||||||||||||||||||| ||| || |||| | |||||||||| |||||||||||||    
T  13640932 aatttgtgcaaggtacttaatgtagagata------aacattaattagatacaaattaaaccaataaagcacaatcgtaaaatttaaagatggatagaaa 13641025  T
Q  230 ctcaagaata 239  Q
    ||||||||||    
T  13641026 ctcaagaata 13641035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 167
Target Start/End: Complemental strand, 13260500 - 13260336
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaat 102  Q
    |||||||||||||||||| |||||| |||||||||||||  |||| || ||||||| | ||||||||||| |||||| |||||| ||||||||| ||| |    
T  13260500 aaagactttattttaagtctggcctgacctttttaaaagcatggtatggcctattagcctgtctaaaagcatagtttgtgttacaaatttcaaacagagt 13260401  T
Q  103 atgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaa 167  Q
    |||||||| ||        |||||||||||||||||||||||||||||||||| |||||||||||    
T  13260400 atgttcataaaaaaaaaaattcctttcaatttgtgcaacgtacttaatataaatataaacattaa 13260336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 167
Target Start/End: Original strand, 9856800 - 9856960
Alignment:
Q  7 actttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaatatgt 106  Q
    |||||||||||| | ||||   |||||||||||||||||  |||| |||||||  ||||||||| |||| ||| |||||| ||||||||| ||| |||||    
T  9856800 actttattttaattctggctcgacctttttaaaagtctgacctgatctattaatctgtctaaaaacctaatttgtgttacaaatttcaaatagagtatgt 9856899  T
Q  107 tcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaa 167  Q
    |||| ||         ||||||||||||||||||||||||||||||| ||||| |||||||    
T  9856900 tcataaaaaaaaaaaatcctttcaatttgtgcaacgtacttaatatagagatacacattaa 9856960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 12569762 - 12569684
Alignment:
Q  1 ttaaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagttt 79  Q
    |||||| ||||||||||||| || ||| ||||||||||||| |||  | | |||||||   ||||||||||||||||||    
T  12569762 ttaaaggctttattttaagtctgacctgacctttttaaaagcctgaccaggcctattagtctgtctaaaagcctagttt 12569684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 27209124 - 27209352
Alignment:
Q  5 agactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaatat 104  Q
    |||||||||||||||| || ||| ||||||||||||||||   ||||||||||| | ||| ||||||  |||||| | |||| ||||||||||||| | |    
T  27209124 agactttattttaagtctgacctgacctttttaaaagtctaacctgacctattagcctgtttaaaagtatagtttgtattacaaatttcaaaaagagttt 27209223  T
Q  105 gttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacacagt 204  Q
    |||||||||||   ||||| ||||||||||||||||||||||||||||| | |||      || |||||| ||||||||||||||||||| ||||||| |    
T  27209224 gttcatcaatt---ttttttctttcaatttgtgcaacgtacttaatatagatata------aatattaatcagatacaaattaaactaataaaacacaat 27209314  T
Q  205 tgtaaaatttatagatggatagaaactcaagaataatc 242  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  27209315 tgtaaaaattatagatggatagaaactcaagaataatc 27209352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 3 - 242
Target Start/End: Original strand, 29442524 - 29442755
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaat 102  Q
    |||| ||||||||||||| || ||| |||||||||||||||||||||  ||||||| | ||||||||| ||||||||||||||| || |||||| | | |    
T  29442524 aaaggctttattttaagtctgtcctgacctttttaaaagtctggtctagcctattagcctgtctaaaaacctagtttatgttacaaaattcaaacaaagt 29442623  T
Q  103 atgttc-atcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacac 201  Q
     ||||| |||| ||||   ||||||||||||||||||||| ||||||||||| |||||| ||||||      ||| ||||| ||||||||||||||||||    
T  29442624 ttgttcgatcattttt---tttcctttcaatttgtgcaacatacttaatatagagataaccattaa------ttatatacagattaaactaatgaaacac 29442714  T
Q  202 agttgtaaaatttatagatggatagaaactcaagaataatc 242  Q
    | || ||||||||||||||||||||||||||||||||||||    
T  29442715 aattctaaaatttatagatggatagaaactcaagaataatc 29442755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 3 - 241
Target Start/End: Original strand, 6635677 - 6635908
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaat 102  Q
    ||||||||||||||||||||| ||| |||||||||||||| |||  |||||||||| |||||||||||||||||||| | |||||| ||||||| ||| |    
T  6635677 aaagactttattttaagtttgacctgacctttttaaaagtttggcttgacctattagcttgtctaaaagcctagtttgtattacgagtttcaaatagagt 6635776  T
Q  103 atgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacaca 202  Q
       |||||| ||||| | |||| ||||||||||| |||| |||||||| || |||||      ||||||||||||||||| |||||| |||| ||||| |    
T  6635777 tcattcatctatttt-tctttcttttcaatttgtccaacatacttaatgtagagata------aacattaattagatacacattaaaataataaaacaaa 6635869  T
Q  203 gttgtaaaatttatagatggatagaaactcaagaataat 241  Q
     |||| ||||||||||||||||| |||||||||||||||    
T  6635870 attgtgaaatttatagatggatataaactcaagaataat 6635908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 3 - 243
Target Start/End: Original strand, 6627878 - 6628111
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaat 102  Q
    ||||||||||||||||||||| ||| |||||||||||||| | |  |||||||||| |||||||||||||||||||| | |||||| ||||||| ||| |    
T  6627878 aaagactttattttaagtttgacctgacctttttaaaagttttgcttgacctattagcttgtctaaaagcctagtttgtattacgagtttcaaatagagt 6627977  T
Q  103 atgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacaca 202  Q
       |||||| ||||| | |||| ||||||||||| |||| |||||||| || |||||      ||||||||||||||||| |||||| |||| ||||| |    
T  6627978 tcattcatctatttt-tctttcttttcaatttgtccaacatacttaatgtagagata------aacattaattagatacacattaaaataataaaacaaa 6628070  T
Q  203 gttgtaaaatttatagatggatagaaactcaagaataatct 243  Q
     |||| ||||||||||||||||| |||||||| ||||||||    
T  6628071 attgtgaaatttatagatggatataaactcaaaaataatct 6628111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 30 - 241
Target Start/End: Complemental strand, 29909951 - 29909747
Alignment:
Q  30 cctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaatatgttcatcaattttgtttttcctttc 129  Q
    ||||||| ||||||||||||||||||||| |  |||||||||||||||||| ||||  ||| ||||| ||| |   |||||| ||||| | |||| ||||    
T  29909951 ccttttttaaagtctggtctgacctattagccggtctaaaagcctagtttaggttataaatatcaaatagagttcattcatccatttt-tctttcttttc 29909853  T
Q  130 aatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacacagttgtaaaatttatagatggatagaaa 229  Q
    |||||||| ||| |||||||| || |  ||||||||||      ||||||||| ||||||||||| ||||||| | ||||||||||||||||||||||||    
T  29909852 aatttgtggaacatacttaatgtagaactaaacattaa------ttagatacacattaaactaataaaacacaatcgtaaaatttatagatggatagaaa 29909759  T
Q  230 ctcaagaataat 241  Q
    ||||||||||||    
T  29909758 ctcaagaataat 29909747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 5938492 - 5938266
Alignment:
Q  8 ctttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaatatgtt 107  Q
    |||||||||||  |||||||| |||||||||| |||||| ||||||||  | | ||||||||| |||||  | |||||| ||||||||| |||     ||    
T  5938492 ctttattttaaacttggcctagcctttttaaa-gtctggcctgacctaagagcctgtctaaaaacctaggctgtgttacaaatttcaaatagagaccatt 5938394  T
Q  108 catcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacacagttgt 207  Q
    |||| ||||| | |||   |||||||||||||||||||||||| || ||||||||||||||      |||||||| ||||||||||| ||||||| | ||    
T  5938393 catccatttt-tctttatgttcaatttgtgcaacgtacttaatgtagagataaacattaac------tagatacacattaaactaataaaacacaatcgt 5938301  T
Q  208 aaaatttatagatggatagaaactcaagaataatc 242  Q
    |||||||||||||||||||||||||||||||||||    
T  5938300 aaaatttatagatggatagaaactcaagaataatc 5938266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 225
Target Start/End: Original strand, 8109255 - 8109468
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaat 102  Q
    |||| |||||||||||| ||||||||   ||||||||||||||  ||||||||||||  |||||||||||||||||||||||||  |||| ||| ||| |    
T  8109255 aaaggctttattttaagcttggcctagtttttttaaaagtctgaactgacctattaatctgtctaaaagcctagtttatgttacatatttaaaatagagt 8109354  T
Q  103 atgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacaca 202  Q
     | |||||| ||||| | |||| |||||| ||||||||| ||| |||| || || ||      ||||||||||||||||| ||||||||||| |||||||    
T  8109355 ttattcatccatttt-tctttcttttcaa-ttgtgcaacatac-taatgtataggta------aacattaattagatacacattaaactaataaaacaca 8109445  T
Q  203 gttgtaaaatttatagatggata 225  Q
     | ||||||||||||||||||||    
T  8109446 atcgtaaaatttatagatggata 8109468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 14858200 - 14858149
Alignment:
Q  179 tacaaattaaactaatgaaacacagttgtaaaatttatagatggatagaaac 230  Q
    |||||| |||| |||| |||||||||||||||||||||||||||||||||||    
T  14858200 tacaaaataaattaataaaacacagttgtaaaatttatagatggatagaaac 14858149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 18421577 - 18421645
Alignment:
Q  172 aattagatacaaattaaactaatgaaacacagttgtaaaatttatagatggatagaaactcaagaataatc 242  Q
    ||||||||||| ||||||||||| |||||   |  |||||||||||||| |||| ||||||||||||||||    
T  18421577 aattagatacagattaaactaataaaacaa--tcataaaatttatagatcgatataaactcaagaataatc 18421645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 44 - 242
Target Start/End: Original strand, 9798047 - 9798235
Alignment:
Q  44 tggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaatatgttcatcaattttgtttttcctttcaatttgtgcaacgt 143  Q
    ||||||||||||||||| |||||||||||||||||| |||||| ||||||||  ||| | |||||||||||    ||||| |||||||||||||||| |     
T  9798047 tggtctgacctattaacctgtctaaaagcctagtttgtgttacaaatttcaacgagagtttgttcatcaat----ttttttctttcaatttgtgcaatgc 9798142  T
Q  144 acttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacacagttgtaaaatttatagatggatagaaactcaagaataatc 242  Q
    |||||||||| | |||      ||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||| ||||| ||||    
T  9798143 acttaatatagatata------aacattaattagatacaaattaaactaataaaacataattgtaaaatttatagatggatagaaactaaagaaaaatc 9798235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 3 - 202
Target Start/End: Complemental strand, 53200462 - 53200271
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaat 102  Q
    |||||||||||||||||  |||||| ||||||| ||||| || |  |||||||||| | ||||||||||||| |||| |||||  ||||||||| ||| |    
T  53200462 aaagactttattttaagcctggcctgaccttttcaaaagcctagcttgacctattagcctgtctaaaagccttgtttgtgttataaatttcaaacagagt 53200363  T
Q  103 atgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacaca 202  Q
     |||||||||||||  ||||||||||||||||||||||| | ||||||||| |||||      ||||||||||||||||||||||||||||| |||||||    
T  53200362 ttgttcatcaattt--tttttcctttcaatttgtgcaacatgcttaatatagagata------aacattaattagatacaaattaaactaataaaacaca 53200271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 54739839 - 54739612
Alignment:
Q  8 ctttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaatatgtt 107  Q
    ||||||||||||  ||| ||  |||||||||| |||||| ||||||||||| | |||||||||||||||||| | |||| ||||||||| ||| |   ||    
T  54739839 ctttattttaagcatggtctggcctttttaaatgtctggcctgacctattagcctgtctaaaagcctagtttgtattacaaatttcaaacagagtccatt 54739740  T
Q  108 catcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacacagttgt 207  Q
    |||| ||||| | | || |||||||||||| ||| |||||||| || |||||      ||||||||| | ||||| ||||||||||| ||||||| | ||    
T  54739739 catccatttt-tctctcttttcaatttgtgtaacatacttaatgtagagata------aacattaatcaaatacacattaaactaattaaacacaatcgt 54739647  T
Q  208 aaaatttatagatggatagaaactcaagaataatc 242  Q
    |||||||||||||||||| ||||||||||||||||    
T  54739646 aaaatttatagatggatataaactcaagaataatc 54739612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 44027840 - 44028047
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagcctagtttatgttacgaatttcaaaaagaat 102  Q
    |||| ||||||||||||| || ||| |||||||||||| | ||||||| ||||||| | ||||||||||  |||||| |||||| ||||||||| |   |    
T  44027840 aaaggctttattttaagtctgacctgacctttttaaaaatttggtctggcctattagcctgtctaaaagtttagtttgtgttacaaatttcaaacaatgt 44027939  T
Q  103 atgttcatcaattttgtttttcctttcaatttgtgcaacgtacttaatataaagataaacattaacattaattagatacaaattaaactaatgaaacaca 202  Q
     |||| |||||||||   |||||||| ||||||||||   ||||||||| ||| |        ||||||||||||||||||||||||||||| |||||||    
T  44027940 ttgtttatcaatttt---tttccttttaatttgtgcagtatacttaatagaaaca--------aacattaattagatacaaattaaactaataaaacaca 44028028  T
Q  203 gttgtaaaatttatagatg 221  Q
     ||||||||||||| ||||    
T  44028029 attgtaaaatttattgatg 44028047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 50424749 - 50424682
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaa 70  Q
    |||||||||||||||||| ||  ||||||||||||||| ||| ||||   |||||||| |||||||||    
T  50424749 aaagactttattttaagtatgatctaacctttttaaaaatctcgtctagtctattaacatgtctaaaa 50424682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 40709702 - 40709660
Alignment:
Q  7 actttattttaagtttggcctaacctttttaaaagtctggtct 49  Q
    ||||||||||||||||||||| ||||| ||||||||| |||||    
T  40709702 actttattttaagtttggcctgaccttcttaaaagtccggtct 40709660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 43106280 - 43106320
Alignment:
Q  3 aaagactttattttaagtttggcctaacctttttaaaagtc 43  Q
    |||||||||||||||||| || ||| |||||||||||||||    
T  43106280 aaagactttattttaagtctgacctgacctttttaaaagtc 43106320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 50496255 - 50496319
Alignment:
Q  8 ctttattttaagtttggcctaacctttttaaaagtctggtctgacctattaacttgtctaaaagc 72  Q
    ||||||||||||| || ||| | ||||||||||| ||   ||||||||||||| |||||||||||    
T  50496255 ctttattttaagtctgacctgatctttttaaaagcctaacctgacctattaacgtgtctaaaagc 50496319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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