View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19133_high_35 (Length: 235)

Name: NF19133_high_35
Description: NF19133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19133_high_35
NF19133_high_35
[»] chr8 (6 HSPs)
chr8 (1-225)||(41566053-41566279)
chr8 (2-225)||(1029688-1029912)
chr8 (29-202)||(11954571-11954745)
chr8 (139-177)||(10659195-10659233)
chr8 (140-177)||(14442609-14442646)
chr8 (124-177)||(41940096-41940149)
[»] chr1 (16 HSPs)
chr1 (2-225)||(48563127-48563352)
chr1 (16-225)||(52148703-52148919)
chr1 (123-177)||(50959523-50959577)
chr1 (100-174)||(16256446-16256520)
chr1 (123-177)||(18628967-18629021)
chr1 (123-177)||(33323891-33323945)
chr1 (130-175)||(2688447-2688492)
chr1 (123-177)||(26925118-26925172)
chr1 (114-167)||(19757743-19757796)
chr1 (114-177)||(8326998-8327061)
chr1 (123-174)||(15394636-15394687)
chr1 (114-177)||(16219108-16219171)
chr1 (100-175)||(18650445-18650520)
chr1 (123-173)||(26759366-26759416)
chr1 (100-174)||(27901223-27901297)
chr1 (141-177)||(23777054-23777090)
[»] chr4 (11 HSPs)
chr4 (31-225)||(2815040-2815236)
chr4 (100-186)||(38011651-38011737)
chr4 (2-200)||(35260214-35260415)
chr4 (114-177)||(1745422-1745485)
chr4 (123-186)||(20649989-20650052)
chr4 (123-177)||(44136806-44136860)
chr4 (123-177)||(44206999-44207053)
chr4 (123-173)||(18402887-18402937)
chr4 (131-177)||(30257435-30257481)
chr4 (123-177)||(41839740-41839794)
chr4 (100-175)||(25100353-25100428)
[»] chr3 (7 HSPs)
chr3 (2-202)||(35740158-35740360)
chr3 (113-177)||(47005839-47005903)
chr3 (112-202)||(24405024-24405113)
chr3 (50-186)||(7903391-7903530)
chr3 (139-177)||(28421122-28421160)
chr3 (114-202)||(17768062-17768150)
chr3 (114-202)||(19069363-19069451)
[»] chr7 (8 HSPs)
chr7 (16-215)||(16994365-16994566)
chr7 (123-225)||(28002637-28002740)
chr7 (123-225)||(27900289-27900391)
chr7 (106-225)||(10623329-10623443)
chr7 (108-187)||(10019739-10019820)
chr7 (139-177)||(46611516-46611554)
chr7 (130-175)||(28302155-28302200)
chr7 (139-184)||(20118253-20118298)
[»] chr2 (14 HSPs)
chr2 (123-224)||(12419490-12419591)
chr2 (123-224)||(12431550-12431651)
chr2 (104-186)||(39228875-39228957)
chr2 (114-182)||(5136174-5136242)
chr2 (130-177)||(4730702-4730749)
chr2 (126-177)||(9848108-9848159)
chr2 (130-177)||(18482109-18482156)
chr2 (114-177)||(35114575-35114638)
chr2 (108-186)||(14695098-14695176)
chr2 (116-174)||(38002009-38002067)
chr2 (136-177)||(20105359-20105400)
chr2 (100-173)||(36254556-36254629)
chr2 (144-181)||(27185801-27185838)
chr2 (144-181)||(27835343-27835380)
[»] chr6 (7 HSPs)
chr6 (112-185)||(3008833-3008906)
chr6 (114-173)||(29032685-29032744)
chr6 (100-177)||(8209983-8210060)
chr6 (137-186)||(6257238-6257287)
chr6 (114-173)||(31304016-31304075)
chr6 (137-177)||(3709550-3709590)
chr6 (122-186)||(6189646-6189710)
[»] scaffold0003 (1 HSPs)
scaffold0003 (100-177)||(353236-353313)
[»] chr5 (3 HSPs)
chr5 (100-177)||(24099400-24099480)
chr5 (123-186)||(18274022-18274085)
chr5 (108-185)||(43168742-43168819)
[»] scaffold0174 (1 HSPs)
scaffold0174 (130-177)||(30582-30629)
[»] scaffold0914 (1 HSPs)
scaffold0914 (142-186)||(796-840)


Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 41566053 - 41566279
Alignment:
Q  1 atggtatatttttcctttttgttcgtgatgttcatgatcagagatggggtggtcgaagacttttggcctattttgatgtggtttgcttttataaacccga 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41566053 atggtatatttttcctttttgttcgtgatgttcatgatcaaagatggggtggtcgaagacttttggcctattttgatgtggtttgcttttataaacccga 41566152  T
Q  101 --gggtatggttctgttaacccataagggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgtatgtttgaattccgttgtgtt 198  Q
      ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41566153 aagggtatggttctgttaacccataagggtctggttactaacgtattagactcatcccacgatctgagttcttacgcgtatgtttgaattccattgtgtt 41566252  T
Q  199 tggttgcttaactgctttgactctctg 225  Q
    ||||||||| |||||||||||||||||    
T  41566253 tggttgcttgactgctttgactctctg 41566279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 2 - 225
Target Start/End: Complemental strand, 1029912 - 1029688
Alignment:
Q  2 tggtatatttttcctttttgttcgtgatgttcatgatcagagatggggtggtcgaagacttttggcctattttgatgtggtttgcttttataaacccg-- 99  Q
    |||||| ||||||||||||| | ||| ||||  |||||| |||  ||||||| |||||||||| ||||||||||| |||||||  || ||||||||||      
T  1029912 tggtatgtttttcctttttgcttgtgctgtttgtgatcatagactgggtggttgaagacttttagcctattttgaagtggttttgttctataaacccgga 1029813  T
Q  100 agggtatggttctgttaacccataagggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgtatgtttgaattccgttgtgttt 199  Q
    ||||| ||||||| |||||||  ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1029812 agggtctggttctattaacccgaaagggtctg-ttactaacgtattggactcatcccacgatctgagttcttacgcgtatgtttgaatcccgttgtgttt 1029714  T
Q  200 ggttgcttaactgctttgactctctg 225  Q
    || ||||| ||||||| |||||||||    
T  1029713 ggctgcttgactgcttcgactctctg 1029688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 202
Target Start/End: Complemental strand, 11954745 - 11954571
Alignment:
Q  29 tgttcatgatcagagatggggtggtcgaagacttttggcctattttgatgtggtttgcttttataaacccga--gggtatggttctgttaacccataagg 126  Q
    ||||| ||||||||||  ||||||| ||||||||| | ||| |||||||||| ||||  || | ||| || |  |||| || ||| ||||||||  ||||    
T  11954745 tgttcgtgatcagagactgggtggttgaagacttt-gacctcttttgatgtgatttggcttcaaaaatcccaaagggtgtgattccgttaacccgaaagg 11954647  T
Q  127 gtctggttattaacgtattggactcatcccacgatctgagttcttacgcgtatgtttgaattccgttgtgtttggt 202  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||    
T  11954646 gtctggttattaacgtattggactcatccctggatctgagttcttacgcgtctgtttgaattccgttgtgtttggt 11954571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 10659233 - 10659195
Alignment:
Q  139 acgtattggactcatcccacgatctgagttcttacgcgt 177  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  10659233 acgtattggactcatccctcgatctgagttcttacgcgt 10659195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 177
Target Start/End: Complemental strand, 14442646 - 14442609
Alignment:
Q  140 cgtattggactcatcccacgatctgagttcttacgcgt 177  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  14442646 cgtattagactcatccctcgatctgagttcttacgcgt 14442609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 41940149 - 41940096
Alignment:
Q  124 agggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgt 177  Q
    ||||| ||||| || |||||||| ||||||||| ||||||||||| ||||||||    
T  41940149 agggtatggtttttgacgtattgaactcatccctcgatctgagtttttacgcgt 41940096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 2 - 225
Target Start/End: Original strand, 48563127 - 48563352
Alignment:
Q  2 tggtatatttttcctttttgttcgtgatgttcatgatcagagatggggtggtcgaagacttttggcctattttgatgtggtttgcttttataaacccga- 100  Q
    |||||| ||||||||||||||||||| ||||  ||||||||||  |||||||||||||||||||||||| |||||||||||||| ||||||||||| ||     
T  48563127 tggtatgtttttcctttttgttcgtgttgtttgtgatcagagactgggtggtcgaagacttttggcctagtttgatgtggtttggttttataaacctgaa 48563226  T
Q  101 -gggtatggttctgttaacccataagggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgtatgtttgaattccgttgtgttt 199  Q
     |||||||||||| ||||||   ||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||   |||||||||    
T  48563227 agggtatggttctattaacctgaaagggtctggttactaacatattggactcatcccacgatctaagttcttacgcgtatgtttgaatctagttgtgttt 48563326  T
Q  200 ggttgcttaactgctttgactctctg 225  Q
    |||||||| ||| |||||||||||||    
T  48563327 ggttgcttgactactttgactctctg 48563352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 52148703 - 52148919
Alignment:
Q  16 tttttgttcgtgatgttcatgatcagagatggggtggtcgaagacttttggcctatttt-gatgtggtttgcttttataaacccga--gggtatggttct 112  Q
    ||||||||| |||||||| |||||||| |   |||||| ||||||||||||||| |||| ||||||||||| ||| | |||||  |  |||||||||| |    
T  52148703 tttttgttcatgatgttcgtgatcagacactaggtggttgaagacttttggcctctttttgatgtggtttgatttcaaaaacctaaaagggtatggttat 52148802  T
Q  113 gttaacccataagggt----ctggttattaacgtattggactcatcccacgatctgagttcttacgcgtatgtttgaattccgttgtgtttggttgctta 208  Q
    ||||||||  ||||||    ||  ||| |||||||||||| || |||| ||||||||||||||| |||||||||||||   | ||||||||||| || |     
T  52148803 gttaacccgaaagggttgcgctaattaataacgtattggaatcgtccctcgatctgagttcttaagcgtatgtttgaacgtcattgtgtttggtggcctg 52148902  T
Q  209 actgctttgactctctg 225  Q
    ||||||| | |||||||    
T  52148903 actgcttcgcctctctg 52148919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 177
Target Start/End: Complemental strand, 50959577 - 50959523
Alignment:
Q  123 aagggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgt 177  Q
    ||||||||||||| | |||||||||||||||||| ||||||||||||||||||||    
T  50959577 aagggtctggttactgacgtattggactcatccctcgatctgagttcttacgcgt 50959523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 16256446 - 16256520
Alignment:
Q  100 agggtatggttctgttaacccataagggtctggttattaacgtattggactcatcccacgatctgagttcttacg 174  Q
    ||||| ||||||| |||||||  ||||||||| ||  | |||||||||||||||||| |||||||||||||||||    
T  16256446 agggtctggttcttttaacccgaaagggtctgtttgctgacgtattggactcatccctcgatctgagttcttacg 16256520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 177
Target Start/End: Complemental strand, 18629021 - 18628967
Alignment:
Q  123 aagggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgt 177  Q
    ||||||||||||| | |||||||||||||||||| | ||||||||||||||||||    
T  18629021 aagggtctggttactgacgtattggactcatccctcaatctgagttcttacgcgt 18628967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 33323891 - 33323945
Alignment:
Q  123 aagggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgt 177  Q
    |||||| |||||| | |||||||||||||||||| ||||||||||||||||||||    
T  33323891 aagggtatggttaatgacgtattggactcatccctcgatctgagttcttacgcgt 33323945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 2688492 - 2688447
Alignment:
Q  130 tggttattaacgtattggactcatcccacgatctgagttcttacgc 175  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||    
T  2688492 tggttactaacgtattggactcatcccacgatctgagttctaacgc 2688447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 177
Target Start/End: Complemental strand, 26925172 - 26925118
Alignment:
Q  123 aagggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgt 177  Q
    |||||| |||||| | | |||||||||||||||| ||||||||||||||||||||    
T  26925172 aagggtatggttactgatgtattggactcatccctcgatctgagttcttacgcgt 26925118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 19757743 - 19757796
Alignment:
Q  114 ttaacccataagggtctggttattaacgtattggactcatcccacgatctgagt 167  Q
    |||||||  |||||||| |||  |||||||||||||||||||||||||||||||    
T  19757743 ttaacccgaaagggtctagttcctaacgtattggactcatcccacgatctgagt 19757796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 8327061 - 8326998
Alignment:
Q  114 ttaacccataagggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgt 177  Q
    |||||||  ||||||||||||  | |||||||| ||||||||| ||||||||||| ||||||||    
T  8327061 ttaacccgaaagggtctggtttctgacgtattgaactcatccctcgatctgagtttttacgcgt 8326998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 15394636 - 15394687
Alignment:
Q  123 aagggtctggttattaacgtattggactcatcccacgatctgagttcttacg 174  Q
    |||| |||||||| ||| ||||||||| |||||| |||||||||||||||||    
T  15394636 aaggatctggttactaatgtattggacgcatccctcgatctgagttcttacg 15394687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 16219108 - 16219171
Alignment:
Q  114 ttaacccataagggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgt 177  Q
    |||||||| |||||||||  || ||||||||| |||||||||   |||||||||||||||||||    
T  16219108 ttaacccaaaagggtctgactagtaacgtattagactcatcctttgatctgagttcttacgcgt 16219171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 18650520 - 18650445
Alignment:
Q  100 agggtatggttctgttaacccataagggtctggttattaacgtattggactcatcccacgatctgagttcttacgc 175  Q
    ||||| ||||||  |||||||  |||||| |||||| | ||||||||||||||||||  ||||| |||||||||||    
T  18650520 agggtgtggttcgtttaacccggaagggtatggttactgacgtattggactcatcccttgatcttagttcttacgc 18650445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 26759366 - 26759416
Alignment:
Q  123 aagggtctggttattaacgtattggactcatcccacgatctgagttcttac 173  Q
    |||||| |||||| | |||||||||||||||||| |||||| |||||||||    
T  26759366 aagggtatggttactgacgtattggactcatccctcgatctaagttcttac 26759416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 27901297 - 27901223
Alignment:
Q  100 agggtatggttctgttaacccataagggtctggttattaacgtattggactcatcccacgatctgagttcttacg 174  Q
    ||||| ||||||| |||||||  ||||||||| ||  |||  ||||||||||||||| ||||| |||||||||||    
T  27901297 agggtctggttcttttaacccgaaagggtctgtttgctaatatattggactcatccctcgatcagagttcttacg 27901223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 177
Target Start/End: Original strand, 23777054 - 23777090
Alignment:
Q  141 gtattggactcatcccacgatctgagttcttacgcgt 177  Q
    |||||||||||||||| |||||||||||| |||||||    
T  23777054 gtattggactcatccctcgatctgagttcctacgcgt 23777090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 31 - 225
Target Start/End: Complemental strand, 2815236 - 2815040
Alignment:
Q  31 ttcatgatcagagatggggtggtcgaagacttttggcctattttgatgtggtttgcttttataaacccgag--ggtatggttctgttaacccataagggt 128  Q
    |||||||||||||| |  ||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||| ||||||| |  ||||||    
T  2815236 ttcatgatcagagacgttgtggtcgaagacttttggcctattttgatgtggtttggttttataaacccgagagggtatggttatgttaactcggaagggt 2815137  T
Q  129 ctggttattaacgtattggactcatcccacgatctgagttcttacgcgtatgtttgaattccgttgtgtttggttgcttaactgctttgactctctg 225  Q
    ||||||| ||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  2815136 ctggttactaatgtattggactcatcctacgatatgagttcttacgcgtatgtttgaattccgttgtctttggttgcttaactgcttcgactctctg 2815040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 100 - 186
Target Start/End: Complemental strand, 38011737 - 38011651
Alignment:
Q  100 agggtatggttctgttaacccataagggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgtatgtttgaa 186  Q
    |||||||||||||| ||||||  ||||||||||||| |||||||||||||||||||| |||||||| |||||||| ||| |||||||    
T  38011737 agggtatggttctgataacccgcaagggtctggttactaacgtattggactcatccctcgatctgaattcttacgtgtaggtttgaa 38011651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 200
Target Start/End: Complemental strand, 35260415 - 35260214
Alignment:
Q  2 tggtatatttttccttttt-gttcgtgatgttcatgatcagagatggggtggtcgaagacttttggccta-ttttgatgtggtttgcttttataaacccg 99  Q
    ||||||||||||| ||||| ||| ||||||||| ||| ||||||  | ||||| ||||| |||||||||  ||||||||||||||| |||  |||||| |    
T  35260415 tggtatatttttcattttttgtttgtgatgttcgtgaccagagactgagtggttgaagaattttggcctcgttttgatgtggtttggtttc-taaacctg 35260317  T
Q  100 a--gggtatggttctgttaacccataagggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgtatgtttgaattccgttgtgt 197  Q
    |  |||||||||||||||||||   |||||| ||  || |||| ||||||| ||||||  |||| |||||||||| ||||||||||||||   |||||||    
T  35260316 aaggggtatggttctgttaacctgaaagggtttgaatactaacatattggattcatccatcgatttgagttcttatgcgtatgtttgaatcatgttgtgt 35260217  T
Q  198 ttg 200  Q
    |||    
T  35260216 ttg 35260214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 1745422 - 1745485
Alignment:
Q  114 ttaacccataagggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgt 177  Q
    |||||||  ||||||||||||| |||||||||||||||||||| | ||||||||||||||||||    
T  1745422 ttaacccgaaagggtctggttactaacgtattggactcatccctcaatctgagttcttacgcgt 1745485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 20649989 - 20650052
Alignment:
Q  123 aagggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgtatgtttgaa 186  Q
    |||||| ||||||||||||||||| ||||||||| | |||||||||||||||| | ||||||||    
T  20649989 aagggtttggttattaacgtattgaactcatccctcaatctgagttcttacgcatctgtttgaa 20650052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 44136806 - 44136860
Alignment:
Q  123 aagggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgt 177  Q
    ||||||||||||| | |||||||||||||||||| ||||| ||||||||||||||    
T  44136806 aagggtctggttactgacgtattggactcatccctcgatccgagttcttacgcgt 44136860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 177
Target Start/End: Complemental strand, 44207053 - 44206999
Alignment:
Q  123 aagggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgt 177  Q
    |||||||||||| || |||||||||||||||||  ||||||||||||||||||||    
T  44207053 aagggtctggttgttgacgtattggactcatccatcgatctgagttcttacgcgt 44206999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 18402937 - 18402887
Alignment:
Q  123 aagggtctggttattaacgtattggactcatcccacgatctgagttcttac 173  Q
    ||||||||||||| |||||||||| ||||||||  ||||||||||||||||    
T  18402937 aagggtctggttactaacgtattgaactcatccatcgatctgagttcttac 18402887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 30257435 - 30257481
Alignment:
Q  131 ggttattaacgtattggactcatcccacgatctgagttcttacgcgt 177  Q
    |||||||||||||||| ||||||||| ||||||||||| ||||||||    
T  30257435 ggttattaacgtattgaactcatccctcgatctgagtttttacgcgt 30257481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 177
Target Start/End: Complemental strand, 41839794 - 41839740
Alignment:
Q  123 aagggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgt 177  Q
    |||||||| |||| | |||||||||||||||||| ||||||||||||||| ||||    
T  41839794 aagggtcttgttactgacgtattggactcatccctcgatctgagttcttatgcgt 41839740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 175
Target Start/End: Original strand, 25100353 - 25100428
Alignment:
Q  100 agggtatggttctgttaacccataagggtctggttattaacgtattggactcatcccacgatctgagttcttacgc 175  Q
    ||||| ||||||  |||||||  ||||||||||||  | |||||||| ||||||||| ||||||||||| ||||||    
T  25100353 agggtctggttcaattaacccgaaagggtctggttgctgacgtattgaactcatccctcgatctgagtttttacgc 25100428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 202
Target Start/End: Complemental strand, 35740360 - 35740158
Alignment:
Q  2 tggtatatttttcctttttgttcgtgatgttcatgatcagagatggggtggtcgaagacttttggcctattttgatgtggtttgcttttataaacccga- 100  Q
    |||||| |||||| |||||||||||  ||||| |||||| |||  ||||||| ||||||||| | | | |||||||||| |||| ||| | ||||||||     
T  35740360 tggtatgtttttcatttttgttcgttttgttcgtgatcaaagactgggtggttgaagactttggccttgttttgatgtgatttggtttcaaaaacccgaa 35740261  T
Q  101 -gggtatggttctgttaacccataagggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgtatgtttgaattccgttgtgttt 199  Q
     ||| |||||||||||| |||  |||||||| | |||||||||||||||||| |||| ||||||||||||||| || | |||| | ||||||||||||||    
T  35740260 agggaatggttctgttagcccgaaagggtctagctattaacgtattggactcgtccctcgatctgagttcttatgcatctgttcgcattccgttgtgttt 35740161  T
Q  200 ggt 202  Q
    |||    
T  35740160 ggt 35740158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 47005903 - 47005839
Alignment:
Q  113 gttaacccataagggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgt 177  Q
    ||||||||| ||||||||||||| | |||||||||||||||||| |||||| |||||||||||||    
T  47005903 gttaacccaaaagggtctggttactgacgtattggactcatccctcgatcttagttcttacgcgt 47005839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 202
Target Start/End: Original strand, 24405024 - 24405113
Alignment:
Q  112 tgttaacccataagggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgtatgtttgaattccgttgtgtttggt 202  Q
    |||||||||  |||||| ||||||||||||||||||||||||| | |||||  ||||||||||||| |||| |||  ||||||||||||||    
T  24405024 tgttaacccgaaagggtttggttattaacgtattggactcatctctcgatcatagttcttacgcgtctgttggaa-accgttgtgtttggt 24405113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 186
Target Start/End: Original strand, 7903391 - 7903530
Alignment:
Q  50 tggtcgaagacttttggcctattt-tgatgtggtttgcttttataaacccgag--ggtatggttctgttaacccataagggtctggttattaacgtattg 146  Q
    |||| ||||||||||||||| ||| |||||||||||| ||| | ||||  ||   | |||||||||||||||||  |||||| || ||| ||||||||||    
T  7903391 tggttgaagacttttggcctctttatgatgtggtttggtttcaaaaacttgaaaagatatggttctgttaacccgaaagggtttgattactaacgtattg 7903490  T
Q  147 gactcatcccacgatctgagttcttacgcgtatgtttgaa 186  Q
    |  |||| || |||| ||||||||||||| ||||||||||    
T  7903491 gggtcattcctcgatttgagttcttacgcatatgtttgaa 7903530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 28421122 - 28421160
Alignment:
Q  139 acgtattggactcatcccacgatctgagttcttacgcgt 177  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  28421122 acgtattggactcatccctcgatttgagttcttacgcgt 28421160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 17768150 - 17768062
Alignment:
Q  114 ttaacccataagggtctggttatta-acgtattggactcatcccacgatctgagttcttacgcgtatgtttgaattccgttgtgtttggt 202  Q
    |||||||| ||||||||||||| || || ||||| ||| ||||| ||||||||||||||| |||| | || ||| | |||||||||||||    
T  17768150 ttaacccaaaagggtctggttactatacctattgaactaatccctcgatctgagttcttatgcgtcttttggaaat-cgttgtgtttggt 17768062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 19069451 - 19069363
Alignment:
Q  114 ttaacccataagggtctggttatta-acgtattggactcatcccacgatctgagttcttacgcgtatgtttgaattccgttgtgtttggt 202  Q
    |||||||| ||||||||||||| || || ||||| ||| ||||| ||||||||||||||| |||| | || ||| | |||||||||||||    
T  19069451 ttaacccaaaagggtctggttactatacctattgaactaatccctcgatctgagttcttatgcgtcttttggaaat-cgttgtgtttggt 19069363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 16994365 - 16994566
Alignment:
Q  16 tttttgttcgtgatgttcatgatcagagatggggtggtcgaagacttttggcct-attttgatgtggtttgcttttataaacccg--agggtatggttct 112  Q
    |||||||| ||||||||| ||||||||||| ||||||| |||||||||||||||  ||||||||||||  | || || ||||  |  |||||||| || |    
T  16994365 tttttgtttgtgatgttcgtgatcagagattgggtggttgaagacttttggcctctttttgatgtggtaggtttcta-aaacttgaaagggtatgatttt 16994463  T
Q  113 gttaacccataagggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgtatgtttgaattccgttgtgtttggttgcttaactg 212  Q
    ||||||||  ||||||||| ||| ||   |||||||||| ||||  |||||||||||||||| ||||||||||||   |||||||||||| || | ||||    
T  16994464 gttaacccgaaagggtctgattactagtttattggactcgtcccttgatctgagttcttacgtgtatgtttgaatcttgttgtgtttggtggcctgactg 16994563  T
Q  213 ctt 215  Q
    |||    
T  16994564 ctt 16994566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 123 - 225
Target Start/End: Original strand, 28002637 - 28002740
Alignment:
Q  123 aagggtctggttattaacgtattggactcatcccacgatctgagttcttacg-cgtatgtttgaattccgttgtgtttggttgcttaactgctttgactc 221  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||  || |||||||||  ||||||||||||| || | ||| ||| |||||    
T  28002637 aagggtctggttattaacgtattgaactcatccctcgatctgagttcttacgatgtctgtttgaatctcgttgtgtttggtggcctgactacttcgactc 28002736  T
Q  222 tctg 225  Q
    ||||    
T  28002737 tctg 28002740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 123 - 225
Target Start/End: Complemental strand, 27900391 - 27900289
Alignment:
Q  123 aagggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgtatgtttgaattccgttgtgtttggttgcttaactgctttgactct 222  Q
    ||||||||||||| |||| ||||||||||||||| |||||||||||||||| ||||||||||||  | | |||||||||| || | ||| ||| ||||||    
T  27900391 aagggtctggttactaacatattggactcatccctcgatctgagttcttacacgtatgtttgaaacctgctgtgtttggtggcctgactacttcgactct 27900292  T
Q  223 ctg 225  Q
    |||    
T  27900291 ctg 27900289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 106 - 225
Target Start/End: Original strand, 10623329 - 10623443
Alignment:
Q  106 tggttctgttaacccataagggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgtatgtttgaattccgttgtgtttggttgc 205  Q
    ||||||| |||||||   ||||| |||||| |||||||||||||||||||| ||||||||||||| |||| | ||||||||     ||||||||||| |     
T  10623329 tggttctattaacccgatagggtttggttactaacgtattggactcatccctcgatctgagttctaacgcatttgtttgaa-----ttgtgtttggtggt 10623423  T
Q  206 ttaactgctttgactctctg 225  Q
     ||||| |||||||||||||    
T  10623424 ctaacttctttgactctctg 10623443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 187
Target Start/End: Complemental strand, 10019820 - 10019739
Alignment:
Q  108 gttctgttaacccataagggtc--tggttattaacgtattggactcatcccacgatctgagttcttacgcgtatgtttgaat 187  Q
    ||||| |||||||| |||||||  |||||| |||||||||||||||||||| |||| ||||||||||||||| || ||||||    
T  10019820 gttctattaacccaaaagggtccgtggttactaacgtattggactcatccctcgatttgagttcttacgcgtctgattgaat 10019739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 46611554 - 46611516
Alignment:
Q  139 acgtattggactcatcccacgatctgagttcttacgcgt 177  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  46611554 acgtattggactcatccctcgatctgagttcttacgcgt 46611516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 28302200 - 28302155
Alignment:
Q  130 tggttattaacgtattggactcatcccacgatctgagttcttacgc 175  Q
    |||||| |||||||||||||||||||| ||||||| ||||||||||    
T  28302200 tggttactaacgtattggactcatccctcgatctgtgttcttacgc 28302155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 20118298 - 20118253
Alignment:
Q  139 acgtattggactcatcccacgatctgagttcttacgcgtatgtttg 184  Q
    |||||||||||||||||| |||| |||||||||||| ||| |||||    
T  20118298 acgtattggactcatccctcgatatgagttcttacgtgtaggtttg 20118253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 123 - 224
Target Start/End: Complemental strand, 12419591 - 12419490
Alignment:
Q  123 aagggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgtatgtttgaattccgttgtgtttggttgcttaactgctttgactct 222  Q
    |||||| |||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||  |  ||||||||||| |||| |||| ||| |||||    
T  12419591 aagggtttggttactaacgtattggactcatccctagatctgagttcttacgcgtatgtttgaaacctattgtgtttggtggcttgactgtttttactct 12419492  T
Q  223 ct 224  Q
    ||    
T  12419491 ct 12419490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 123 - 224
Target Start/End: Complemental strand, 12431651 - 12431550
Alignment:
Q  123 aagggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgtatgtttgaattccgttgtgtttggttgcttaactgctttgactct 222  Q
    |||||| |||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||  |  ||||||||||| |||| |||| ||| |||||    
T  12431651 aagggtttggttactaacgtattggactcatccctagatctgagttcttacgcgtatgtttgaaacctattgtgtttggtggcttgactgtttttactct 12431552  T
Q  223 ct 224  Q
    ||    
T  12431551 ct 12431550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 104 - 186
Target Start/End: Original strand, 39228875 - 39228957
Alignment:
Q  104 tatggttctgttaacccataagggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgtatgtttgaa 186  Q
    |||||||||||||||||  |||| |||||||| ||||||||| |||||||||| |||||||||||||||||||| ||| ||||    
T  39228875 tatggttctgttaacccgaaaggttctggttactaacgtattcgactcatccctcgatctgagttcttacgcgtctgtctgaa 39228957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 5136174 - 5136242
Alignment:
Q  114 ttaacccataagggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgtatgtt 182  Q
    |||||||  |||||| ||| ||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  5136174 ttaacccgaaagggtttggctattaacgtattggactcatccctcgatctgagttcttacgcgtctgtt 5136242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 4730702 - 4730749
Alignment:
Q  130 tggttattaacgtattggactcatcccacgatctgagttcttacgcgt 177  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||    
T  4730702 tggttactaacgtattggactcatcccacgatctgagttctaacgcgt 4730749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 177
Target Start/End: Original strand, 9848108 - 9848159
Alignment:
Q  126 ggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgt 177  Q
    |||||||||| | |||||||||||||||||| ||||||||||||||||||||    
T  9848108 ggtctggttactgacgtattggactcatccctcgatctgagttcttacgcgt 9848159  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 18482156 - 18482109
Alignment:
Q  130 tggttattaacgtattggactcatcccacgatctgagttcttacgcgt 177  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  18482156 tggttattaacatattggactcatccctcgatctgagttcttacgcgt 18482109  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 35114638 - 35114575
Alignment:
Q  114 ttaacccataagggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgt 177  Q
    |||||||| ||||||||||||||| ||||||| ||||||||||  |||| ||| ||||||||||    
T  35114638 ttaacccaaaagggtctggttattgacgtattagactcatcccttgatccgagctcttacgcgt 35114575  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 186
Target Start/End: Complemental strand, 14695176 - 14695098
Alignment:
Q  108 gttctgttaacccataagggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgtatgtttgaa 186  Q
    ||||||||||| |  |||||||| |||| |||||||||||||| ||| | |||||| |||||||||| |||||| ||||    
T  14695176 gttctgttaactcgaaagggtctagttactaacgtattggacttatcactcgatctaagttcttacgagtatgtatgaa 14695098  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 174
Target Start/End: Original strand, 38002009 - 38002067
Alignment:
Q  116 aacccataagggtctggttattaacgtattggactcatcccacgatctgagttcttacg 174  Q
    |||||| || ||| || ||| |||||||||||||||||||| |||||||||||||||||    
T  38002009 aacccaaaaaggtatgcttactaacgtattggactcatccctcgatctgagttcttacg 38002067  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 177
Target Start/End: Original strand, 20105359 - 20105400
Alignment:
Q  136 ttaacgtattggactcatcccacgatctgagttcttacgcgt 177  Q
    ||||||||||||||||||| | ||||||||||||||||||||    
T  20105359 ttaacgtattggactcatcactcgatctgagttcttacgcgt 20105400  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 36254556 - 36254629
Alignment:
Q  100 agggtatggttctgttaacccataagggtctggttattaacgtattggactcatcccacgatctgagttcttac 173  Q
    ||||| ||||||| | |||||  |||| |||||||  || ||||||||||||||||| ||||||||||||||||    
T  36254556 agggtctggttctataaacccgaaaggttctggtttctatcgtattggactcatccctcgatctgagttcttac 36254629  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 27185801 - 27185838
Alignment:
Q  144 ttggactcatcccacgatctgagttcttacgcgtatgt 181  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  27185801 ttggactcatccctcgatctgagttcatacgcgtatgt 27185838  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 27835343 - 27835380
Alignment:
Q  144 ttggactcatcccacgatctgagttcttacgcgtatgt 181  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  27835343 ttggactcatccctcgatctgagttcatacgcgtatgt 27835380  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 3008906 - 3008833
Alignment:
Q  112 tgttaacccataagggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgtatgtttga 185  Q
    |||||||||  ||||||||||||| ||||||||| |||||||||  |||||||||||||||| |||||||||||    
T  3008906 tgttaacccgaaagggtctggttactaacgtattagactcatccttcgatctgagttcttacacgtatgtttga 3008833  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 114 - 173
Target Start/End: Original strand, 29032685 - 29032744
Alignment:
Q  114 ttaacccataagggtctggttattaacgtattggactcatcccacgatctgagttcttac 173  Q
    |||||||| || |||||||||| |||||||||||||||||||| ||||||||||||||||    
T  29032685 ttaacccaaaatggtctggttactaacgtattggactcatccctcgatctgagttcttac 29032744  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 100 - 177
Target Start/End: Original strand, 8209983 - 8210060
Alignment:
Q  100 agggtatggttctgttaacccataagggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgt 177  Q
    ||||| |||||||  ||||||  |||| |||||||| |||| ||||||||||||||| ||||||||||||||||||||    
T  8209983 agggtctggttcttctaacccggaaggttctggttactaacttattggactcatccctcgatctgagttcttacgcgt 8210060  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 6257238 - 6257287
Alignment:
Q  137 taacgtattggactcatcccacgatctgagttcttacgcgtatgtttgaa 186  Q
    |||| ||||||||||||||| |||||||||||||||||||| ||||||||    
T  6257238 taacatattggactcatccctcgatctgagttcttacgcgtttgtttgaa 6257287  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 173
Target Start/End: Original strand, 31304016 - 31304075
Alignment:
Q  114 ttaacccataagggtctggttattaacgtattggactcatcccacgatctgagttcttac 173  Q
    |||||||  ||||||||||||| | |||||||| ||||||||| ||||||||||||||||    
T  31304016 ttaacccgaaagggtctggttactgacgtattgaactcatccctcgatctgagttcttac 31304075  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 3709590 - 3709550
Alignment:
Q  137 taacgtattggactcatcccacgatctgagttcttacgcgt 177  Q
    |||||||||||||||||||||| || |||||||||||||||    
T  3709590 taacgtattggactcatcccacaatatgagttcttacgcgt 3709550  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 6189646 - 6189710
Alignment:
Q  122 taagggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgtatgtttgaa 186  Q
    |||||| ||||||| ||| |||||||||||||||| |||||| | |||||| || | ||||||||    
T  6189646 taagggcctggttactaatgtattggactcatccctcgatctaaattcttaggcatctgtttgaa 6189710  T

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Target: scaffold0003 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 100 - 177
Target Start/End: Complemental strand, 353313 - 353236
Alignment:
Q  100 agggtatggttctgttaacccataagggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgt 177  Q
    ||||| |||| |||||||| |  ||||||||||||| | || ||||||||||||||| ||||||||||||||||||||    
T  353313 agggtctggtcctgttaactcgaaagggtctggttactgacatattggactcatccctcgatctgagttcttacgcgt 353236  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 177
Target Start/End: Original strand, 24099400 - 24099480
Alignment:
Q  100 agggtatggttctgttaacccataagggtctg---gttattaacgtattggactcatcccacgatctgagttcttacgcgt 177  Q
    ||||||||||| | |||||||  |||||||||   ||||||||||||||| ||||||||| ||||||||||| ||||||||    
T  24099400 agggtatggttttattaacccgaaagggtctgttggttattaacgtattgaactcatccctcgatctgagtttttacgcgt 24099480  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 18274022 - 18274085
Alignment:
Q  123 aagggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgtatgtttgaa 186  Q
    ||||||||||||| ||||  |||||||||||| | ||||| ||||| |||||||||||||||||    
T  18274022 aagggtctggttactaacacattggactcatcactcgatcagagtttttacgcgtatgtttgaa 18274085  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 185
Target Start/End: Complemental strand, 43168819 - 43168742
Alignment:
Q  108 gttctgttaacccataagggtctggttattaacgtattggactcatcccacgatctgagttcttacgcgtatgtttga 185  Q
    |||||||| ||||  ||| ||||||||  ||||||||| |||||||||| | || |||||||||||| || |||||||    
T  43168819 gttctgtttacccgaaagagtctggttgctaacgtattagactcatccctcaatttgagttcttacgtgtctgtttga 43168742  T

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Target: scaffold0174 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 30582 - 30629
Alignment:
Q  130 tggttattaacgtattggactcatcccacgatctgagttcttacgcgt 177  Q
    |||||| ||||||||||||||||||||||||| |||||||| ||||||    
T  30582 tggttactaacgtattggactcatcccacgatatgagttctaacgcgt 30629  T

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Target: scaffold0914 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0914
Description:

Target: scaffold0914; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 840 - 796
Alignment:
Q  142 tattggactcatcccacgatctgagttcttacgcgtatgtttgaa 186  Q
    ||||||||||||||| |||||||||||||||| ||| || |||||    
T  840 tattggactcatccctcgatctgagttcttacacgtttgattgaa 796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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