View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19133_high_36 (Length: 235)

Name: NF19133_high_36
Description: NF19133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19133_high_36
NF19133_high_36
[»] chr4 (10 HSPs)
chr4 (1-221)||(34457904-34458126)
chr4 (15-77)||(47764723-47764785)
chr4 (1-58)||(53995773-53995830)
chr4 (1-65)||(7290679-7290743)
chr4 (8-58)||(23601943-23601993)
chr4 (26-65)||(5382653-5382692)
chr4 (14-65)||(51084212-51084263)
chr4 (1-59)||(50689231-50689289)
chr4 (1-58)||(1458311-1458368)
chr4 (25-65)||(47305185-47305225)
[»] chr5 (8 HSPs)
chr5 (8-65)||(10541458-10541515)
chr5 (1-65)||(12621253-12621317)
chr5 (1-58)||(31335285-31335342)
chr5 (1-58)||(34583523-34583580)
chr5 (7-58)||(40897555-40897606)
chr5 (14-66)||(5863444-5863496)
chr5 (1-57)||(31223616-31223672)
chr5 (22-58)||(31302970-31303006)
[»] chr2 (8 HSPs)
chr2 (1-58)||(38855681-38855738)
chr2 (1-58)||(38119497-38119554)
chr2 (9-77)||(12068485-12068553)
chr2 (1-58)||(5305423-5305480)
chr2 (14-65)||(30617098-30617149)
chr2 (14-58)||(41534984-41535028)
chr2 (14-57)||(30487639-30487684)
chr2 (1-58)||(40356138-40356195)
[»] chr6 (6 HSPs)
chr6 (1-65)||(16166770-16166834)
chr6 (1-58)||(692831-692888)
chr6 (1-65)||(22293482-22293546)
chr6 (1-58)||(4127250-4127307)
chr6 (1-59)||(6139155-6139213)
chr6 (21-57)||(17313890-17313926)
[»] chr3 (4 HSPs)
chr3 (8-65)||(9797956-9798013)
chr3 (7-57)||(53200476-53200526)
chr3 (1-58)||(44027775-44027832)
chr3 (1-58)||(54739852-54739909)
[»] chr7 (4 HSPs)
chr7 (8-58)||(9458637-9458687)
chr7 (14-65)||(5734444-5734495)
chr7 (1-77)||(26425107-26425183)
chr7 (8-58)||(4920267-4920317)
[»] chr1 (5 HSPs)
chr1 (8-58)||(12569775-12569825)
chr1 (1-59)||(40708343-40708401)
chr1 (8-65)||(35361831-35361888)
chr1 (1-57)||(13260508-13260564)
chr1 (8-53)||(3289049-3289094)
[»] chr8 (2 HSPs)
chr8 (8-59)||(29442458-29442509)
chr8 (8-58)||(27209057-27209107)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 34458126 - 34457904
Alignment:
Q  1 aaaagaccaaggtttaggccttagttttttcaactatgcctagcctatttaagcaaagttcggcttattcccacccccaaggcactagttagcaagaccg 100  Q
    ||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |  |||| ||||| |||||||     
T  34458126 aaaaggccaaggcttaggtcttagttttttcaactatgcctagcctatttaagcaaagtccggctcattcccacccctagagcacgagttaacaagacca 34458027  T
Q  101 tgtattaagtcattcttttaatataaaaa---taaaaatgaccattgccattcgctacgaagaaatgacattgtcgttgttggaattttaaacatttttt 197  Q
    | |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34458026 t-tattaagtcattcttttaatataaaaaaaataaaaatgaccattgccattcgctacgaagaaatgacattgtcgttgttggaattttaaacatttttt 34457928  T
Q  198 aagtctttgtccggaccatttata 221  Q
    ||||||||||||||||||||||||    
T  34457927 aagtctttgtccggaccatttata 34457904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 47764723 - 47764785
Alignment:
Q  15 taggccttagttttttcaactatgcctagcctatttaagcaaagttcggcttattcccacccc 77  Q
    |||||||||||||||||||||| |||||||||||||||||||||  ||||| |||||||||||    
T  47764723 taggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcattcccacccc 47764785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 53995773 - 53995830
Alignment:
Q  1 aaaagaccaaggtttaggccttagttttttcaactatgcctagcctatttaagcaaag 58  Q
    ||||| || ||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  53995773 aaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaag 53995830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 7290743 - 7290679
Alignment:
Q  1 aaaagaccaaggtttaggccttagttttttcaactatgcctagcctatttaagcaaagttcggct 65  Q
    |||||||||||| |||||| ||||||||||||||||  |||||||||||||| |||||| |||||    
T  7290743 aaaagaccaaggcttaggctttagttttttcaactaaacctagcctatttaaccaaagtccggct 7290679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 23601993 - 23601943
Alignment:
Q  8 caaggtttaggccttagttttttcaactatgcctagcctatttaagcaaag 58  Q
    ||||| ||||||||||||||||||||||| | |||||||||||||||||||    
T  23601993 caaggcttaggccttagttttttcaactaggtctagcctatttaagcaaag 23601943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 5382653 - 5382692
Alignment:
Q  26 tttttcaactatgcctagcctatttaagcaaagttcggct 65  Q
    ||||||||||| |||| |||||||||||||||||||||||    
T  5382653 tttttcaactaggcctggcctatttaagcaaagttcggct 5382692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 51084263 - 51084212
Alignment:
Q  14 ttaggccttagttttttcaactatgcctagcctatttaagcaaagttcggct 65  Q
    |||||| |||||||||||||||| |||  |||||||||||||||| ||||||    
T  51084263 ttaggctttagttttttcaactaggcccggcctatttaagcaaagctcggct 51084212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 50689289 - 50689231
Alignment:
Q  1 aaaagaccaaggtttaggccttagttttttcaactatgcctagcctatttaagcaaagt 59  Q
    |||||||||||| ||| ||||||||||||||||||| | |   ||||||||||||||||    
T  50689289 aaaagaccaaggcttaagccttagttttttcaactaggtcagacctatttaagcaaagt 50689231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 1458368 - 1458311
Alignment:
Q  1 aaaagaccaaggtttaggccttagttttttcaactatgcctagcctatttaagcaaag 58  Q
    ||||| |||||  ||||||||||||||||||||| |  |||| |||||||||||||||    
T  1458368 aaaaggccaagacttaggccttagttttttcaacaagacctaacctatttaagcaaag 1458311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 47305185 - 47305225
Alignment:
Q  25 ttttttcaactatgcctagcctatttaagcaaagttcggct 65  Q
    |||||||||||| ||||||||||||||| |||||| |||||    
T  47305185 ttttttcaactaggcctagcctatttaatcaaagtccggct 47305225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 10541515 - 10541458
Alignment:
Q  8 caaggtttaggccttagttttttcaactatgcctagcctatttaagcaaagttcggct 65  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  10541515 caaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagtccggct 10541458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 12621317 - 12621253
Alignment:
Q  1 aaaagaccaaggtttaggccttagttttttcaactatgcctagcctatttaagcaaagttcggct 65  Q
    |||||| ||||| |||||||||| ||||||||||||  ||||||||||||||||||||| |||||    
T  12621317 aaaagatcaaggcttaggccttaattttttcaactaaacctagcctatttaagcaaagtccggct 12621253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 31335342 - 31335285
Alignment:
Q  1 aaaagaccaaggtttaggccttagttttttcaactatgcctagcctatttaagcaaag 58  Q
    ||||| |||| | ||||||||||||||||||||| | |||||||||||||||||||||    
T  31335342 aaaaggccaaagcttaggccttagttttttcaacaaggcctagcctatttaagcaaag 31335285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 34583523 - 34583580
Alignment:
Q  1 aaaagaccaaggtttaggccttagttttttcaactatgcctagcctatttaagcaaag 58  Q
    ||||| |||||| ||||| ||||||||||||||||| |||||||||||||||| ||||    
T  34583523 aaaaggccaaggcttaggtcttagttttttcaactaggcctagcctatttaagtaaag 34583580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 40897555 - 40897606
Alignment:
Q  7 ccaaggtttaggccttagttttttcaactatgcctagcctatttaagcaaag 58  Q
    |||||| |||||| |||||||||||||| | |||||||||||||||||||||    
T  40897555 ccaaggcttaggctttagttttttcaacaaggcctagcctatttaagcaaag 40897606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 5863444 - 5863496
Alignment:
Q  14 ttaggccttagttttttcaactatgcctagcctatttaagcaaagttcggctt 66  Q
    |||||| ||| |||||||||||| ||||  |||||||||||||||||| ||||    
T  5863444 ttaggctttatttttttcaactaggcctgacctatttaagcaaagttcagctt 5863496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 31223672 - 31223616
Alignment:
Q  1 aaaagaccaaggtttaggccttagttttttcaactatgcctagcctatttaagcaaa 57  Q
    |||||||||| | |||| |||||||||||||||  | |||||| |||||||||||||    
T  31223672 aaaagaccaaagcttagaccttagttttttcaatgaggcctagtctatttaagcaaa 31223616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 31303006 - 31302970
Alignment:
Q  22 tagttttttcaactatgcctagcctatttaagcaaag 58  Q
    ||||||||||||| | |||||||||||||||||||||    
T  31303006 tagttttttcaacaaggcctagcctatttaagcaaag 31302970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 38855681 - 38855738
Alignment:
Q  1 aaaagaccaaggtttaggccttagttttttcaactatgcctagcctatttaagcaaag 58  Q
    ||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  38855681 aaaaggccaaggcttaggccttagttttttcaactaggcctagcctatttaagcaaag 38855738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 38119554 - 38119497
Alignment:
Q  1 aaaagaccaaggtttaggccttagttttttcaactatgcctagcctatttaagcaaag 58  Q
    ||||||||||||||||||| ||| |||||||||||| ||||| |||||||||||||||    
T  38119554 aaaagaccaaggtttaggctttatttttttcaactaggcctaacctatttaagcaaag 38119497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 12068553 - 12068485
Alignment:
Q  9 aaggtttaggccttagttttttcaactatgcctagcctatttaagcaaagttcggcttattcccacccc 77  Q
    |||| |||||| |||||||||||||||| |||||||||||||||||||||  || || |||||||||||    
T  12068553 aaggcttaggctttagttttttcaactaggcctagcctatttaagcaaagcccgactcattcccacccc 12068485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 5305480 - 5305423
Alignment:
Q  1 aaaagaccaaggtttaggccttagttttttcaactatgcctagcctatttaagcaaag 58  Q
    ||||| |||||  ||||||||||||||||||||||| |||| ||||||||||||||||    
T  5305480 aaaaggccaagtcttaggccttagttttttcaactaggcctggcctatttaagcaaag 5305423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 30617149 - 30617098
Alignment:
Q  14 ttaggccttagttttttcaactatgcctagcctatttaagcaaagttcggct 65  Q
    |||||| |||||||||||||||| |||| |||||||||||||||| ||||||    
T  30617149 ttaggctttagttttttcaactaggcctggcctatttaagcaaagctcggct 30617098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 41534984 - 41535028
Alignment:
Q  14 ttaggccttagttttttcaactatgcctagcctatttaagcaaag 58  Q
    |||||||||| |||||||||||| ||||||||||||||| |||||    
T  41534984 ttaggccttaattttttcaactaggcctagcctatttaaccaaag 41535028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 30487684 - 30487639
Alignment:
Q  14 ttaggccttagtttttt--caactatgcctagcctatttaagcaaa 57  Q
    |||||||||||||||||  |||||| ||||||||||||||||||||    
T  30487684 ttaggccttagttttttttcaactaggcctagcctatttaagcaaa 30487639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 40356138 - 40356195
Alignment:
Q  1 aaaagaccaaggtttaggccttagttttttcaactatgcctagcctatttaagcaaag 58  Q
    ||||| |||||  ||||||||||||||||||||| | ||||||||||| ||| |||||    
T  40356138 aaaaggccaagacttaggccttagttttttcaacaaggcctagcctatctaaacaaag 40356195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 16166770 - 16166834
Alignment:
Q  1 aaaagaccaaggtttaggccttagttttttcaactatgcctagcctatttaagcaaagttcggct 65  Q
    ||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||| || |||||    
T  16166770 aaaaggccaaggtttaggccttagttttttcaactaggcctagcttatttaagcaatgtccggct 16166834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 692888 - 692831
Alignment:
Q  1 aaaagaccaaggtttaggccttagttttttcaactatgcctagcctatttaagcaaag 58  Q
    ||||| |||||  ||||| ||||||||||||||||| |||||||||||||||||||||    
T  692888 aaaaggccaagacttaggtcttagttttttcaactaggcctagcctatttaagcaaag 692831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 22293482 - 22293546
Alignment:
Q  1 aaaagaccaaggtttaggccttagttttttcaactatgcctagcctatttaagcaaagttcggct 65  Q
    ||||| |||||| ||||||||||| ||||||||||| | |  |||||||||||||||||||||||    
T  22293482 aaaaggccaaggcttaggccttagatttttcaactaggtcaggcctatttaagcaaagttcggct 22293546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 4127307 - 4127250
Alignment:
Q  1 aaaagaccaaggtttaggccttagttttttcaactatgcctagcctatttaagcaaag 58  Q
    ||||| |||||| ||||||||||| ||||||  ||| |||||||||||||||||||||    
T  4127307 aaaaggccaaggcttaggccttaggtttttccgctaggcctagcctatttaagcaaag 4127250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 6139155 - 6139213
Alignment:
Q  1 aaaagaccaaggtttaggccttagttttttcaactatgcctagcctatttaagcaaagt 59  Q
    ||||| |||||| |||||||||||||||||||| || | |  |||||||||||||||||    
T  6139155 aaaaggccaaggcttaggccttagttttttcaattaggtcaggcctatttaagcaaagt 6139213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 17313926 - 17313890
Alignment:
Q  21 ttagttttttcaactatgcctagcctatttaagcaaa 57  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  17313926 ttagttttttcaactaggcctaacctatttaagcaaa 17313890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 9798013 - 9797956
Alignment:
Q  8 caaggtttaggccttagttttttcaactatgcctagcctatttaagcaaagttcggct 65  Q
    ||||| |||||| |||||||||||||||| |||||||||||||||||||||| |||||    
T  9798013 caaggcttaggctttagttttttcaactaggcctagcctatttaagcaaagtccggct 9797956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 53200476 - 53200526
Alignment:
Q  7 ccaaggtttaggccttagttttttcaactatgcctagcctatttaagcaaa 57  Q
    |||||| |||| ||||||||||||||| || ||||||| ||||||||||||    
T  53200476 ccaaggcttagaccttagttttttcaattaggcctagcttatttaagcaaa 53200526  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 44027832 - 44027775
Alignment:
Q  1 aaaagaccaaggtttaggccttagttttttcaactatgcctagcctatttaagcaaag 58  Q
    |||||||||||  |||| | ||| |||||||||||| ||||| |||||||||||||||    
T  44027832 aaaagaccaagacttagactttaattttttcaactaggcctaacctatttaagcaaag 44027775  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 54739852 - 54739909
Alignment:
Q  1 aaaagaccaaggtttaggccttagttttttcaactatgcctagcctatttaagcaaag 58  Q
    ||||| |||||| ||||||||||||| ||||||||| | |  ||||||||||||||||    
T  54739852 aaaaggccaaggcttaggccttagttgtttcaactaggtcaggcctatttaagcaaag 54739909  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 9458687 - 9458637
Alignment:
Q  8 caaggtttaggccttagttttttcaactatgcctagcctatttaagcaaag 58  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||| ||||    
T  9458687 caaggcttaggccttagttttttcaactaggcctagcctatttaagaaaag 9458637  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 5734444 - 5734495
Alignment:
Q  14 ttaggccttagttttttcaactatgcctagcctatttaagcaaagttcggct 65  Q
    |||||||||| ||||||||||||  |||| ||||||||||||||||||||||    
T  5734444 ttaggccttaattttttcaactagacctatcctatttaagcaaagttcggct 5734495  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 26425183 - 26425107
Alignment:
Q  1 aaaagaccaaggtttaggccttagttttttcaactatgcctagcctatttaagcaaagttcggcttattcccacccc 77  Q
    ||||| |||||| ||| ||||||||||||||||||| ||||    ||||||||||||||  |||| |||||||||||    
T  26425183 aaaaggccaaggcttaagccttagttttttcaactaagcctgaattatttaagcaaagtctggctcattcccacccc 26425107  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 4920267 - 4920317
Alignment:
Q  8 caaggtttaggccttagttttttcaactatgcctagcctatttaagcaaag 58  Q
    ||||| ||||||||||| |||||| |||| ||||||| |||||||||||||    
T  4920267 caaggcttaggccttaggtttttccactaggcctagcttatttaagcaaag 4920317  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 12569775 - 12569825
Alignment:
Q  8 caaggtttaggccttagttttttcaactatgcctagcctatttaagcaaag 58  Q
    ||||| |||| |||||||||||||||||| |||||||||||||||||||||    
T  12569775 caaggcttagaccttagttttttcaactaggcctagcctatttaagcaaag 12569825  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 40708343 - 40708401
Alignment:
Q  1 aaaagaccaaggtttaggccttagttttttcaactatgcctagcctatttaagcaaagt 59  Q
    ||||| |||||| |||||| |||||||||||||||| ||||||||||||||| ||||||    
T  40708343 aaaaggccaaggcttaggctttagttttttcaactaggcctagcctatttaaccaaagt 40708401  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 35361888 - 35361831
Alignment:
Q  8 caaggtttaggccttagttttttcaactatgcctagcctatttaagcaaagttcggct 65  Q
    ||||| |||||||||||||||||||| || ||| ||||||| ||||||||| ||||||    
T  35361888 caaggcttaggccttagttttttcaaataggccaagcctatataagcaaagctcggct 35361831  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 13260508 - 13260564
Alignment:
Q  1 aaaagaccaaggtttaggccttagttttttcaactatgcctagcctatttaagcaaa 57  Q
    ||||| |||||  ||||| ||||||||||||||||| |||||| |||||||||||||    
T  13260508 aaaaggccaagacttaggtcttagttttttcaactaggcctagtctatttaagcaaa 13260564  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 3289094 - 3289049
Alignment:
Q  8 caaggtttaggccttagttttttcaactatgcctagcctatttaag 53  Q
    ||||| |||| |||||||||||||||||| ||||| ||||||||||    
T  3289094 caaggcttagaccttagttttttcaactaggcctaacctatttaag 3289049  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 29442509 - 29442458
Alignment:
Q  8 caaggtttaggccttagttttttcaactatgcctagcctatttaagcaaagt 59  Q
    ||||| ||| ||||||||||||||||||| ||||| ||||||||||||||||    
T  29442509 caaggcttaagccttagttttttcaactaggcctaacctatttaagcaaagt 29442458  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 27209107 - 27209057
Alignment:
Q  8 caaggtttaggccttagttttttcaactatgcctagcctatttaagcaaag 58  Q
    ||||| ||| ||||||||||||||||||| ||||| |||||||||||||||    
T  27209107 caaggcttatgccttagttttttcaactaggcctaacctatttaagcaaag 27209057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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