View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19133_high_6 (Length: 495)
Name: NF19133_high_6
Description: NF19133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19133_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 11 - 345
Target Start/End: Complemental strand, 5995386 - 5995052
Alignment:
| Q |
11 |
cagagaagaaaagttttggttctgttttcaatagtttttataagcttgaaagtgaatattatgatcattacaagaaagttatgggaactaaaagttgggg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5995386 |
cagagaagaaaagttttggttctgttttcaatagtttttataagcttgaaagtgaatattatgatcattacaagaaagttatgggaactaaaagttgggg |
5995287 |
T |
|
| Q |
111 |
acttggacctgtttctttatgggctaatcaagatgattcagataaagctgcaagagggtatgcaaagaaagaagaaggtgcaaaagaagaagggtggttg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5995286 |
acttggacctgtttctttatgggctaatcaagatgattcagataaagctgcaagagggtatgcaaggaaagaagaaggtgcaaaagaagaagggtggttg |
5995187 |
T |
|
| Q |
211 |
aaatggttgaattcaaaaccagatggttctgttttatatgtaagttttggcagtatgaataaatttccttattctcagttagttgaaattgcacatgcac |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5995186 |
aaatggttgaattcaaaaccagatggttctgttttatatgtaagttttggcagtatgaataaatttccttattctcagttagttgaaattgcacatgcac |
5995087 |
T |
|
| Q |
311 |
ttgaagattcaggtcataatttcatttgggttgtt |
345 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5995086 |
ttgaaaattcaggtcataatttcatttgggttgtt |
5995052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 414 - 479
Target Start/End: Complemental strand, 5994983 - 5994918
Alignment:
| Q |
414 |
tggaaaaggctatttgatttggggatgggcaccacagcttttgatacttgagaatcatgcaattgg |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5994983 |
tggaaaaggctatttgatttggggatgggcaccacagcttttgatacttgagaatcatgcaattgg |
5994918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 17620000 - 17620052
Alignment:
| Q |
293 |
ttgaaattgcacatgcacttgaagattcaggtcataatttcatttgggttgtt |
345 |
Q |
| |
|
||||||| || ||||||||||||| |||| | ||||||||||||||||||||| |
|
|
| T |
17620000 |
ttgaaatagctcatgcacttgaagcttcaagccataatttcatttgggttgtt |
17620052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 237 - 345
Target Start/End: Original strand, 26260335 - 26260443
Alignment:
| Q |
237 |
ttctgttttatatgtaagttttggcagtatgaataaatttccttattctcagttagttgaaattgcacatgcacttgaagattcaggtcataatttcatt |
336 |
Q |
| |
|
|||||| || |||||||||||||| || ||| || || ||||| ||||| | |||||||| || |||| ||||||| |||||||||||||||||||| |
|
|
| T |
26260335 |
ttctgtgttgtatgtaagttttggaagcttgactaggctttcttatgctcaggttgttgaaatagctcatggacttgaaaattcaggtcataatttcatt |
26260434 |
T |
|
| Q |
337 |
tgggttgtt |
345 |
Q |
| |
|
||||||||| |
|
|
| T |
26260435 |
tgggttgtt |
26260443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 345
Target Start/End: Original strand, 26227508 - 26227543
Alignment:
| Q |
310 |
cttgaagattcaggtcataatttcatttgggttgtt |
345 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |
|
|
| T |
26227508 |
cttgaaaattcaggtcataatttcatttgggttgtt |
26227543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 344
Target Start/End: Original strand, 26191786 - 26191835
Alignment:
| Q |
295 |
gaaattgcacatgcacttgaagattcaggtcataatttcatttgggttgt |
344 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||| || |||||||| |
|
|
| T |
26191786 |
gaaattgcacatgggcttgaaaattcaggtcataattttatctgggttgt |
26191835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 14710309 - 14710257
Alignment:
| Q |
293 |
ttgaaattgcacatgcacttgaagattcaggtcataatttcatttgggttgtt |
345 |
Q |
| |
|
||||||| || ||||||||||||| |||| | ||| ||||||||||||||||| |
|
|
| T |
14710309 |
ttgaaatagctcatgcacttgaagcttcaagccatgatttcatttgggttgtt |
14710257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 345
Target Start/End: Original strand, 14869743 - 14869857
Alignment:
| Q |
231 |
agatggttctgttttatatgtaagttttggcagtatgaataaatttccttattctcagttagttgaaattgcacatgcacttgaagattcaggtcataat |
330 |
Q |
| |
|
||||| ||||||| | ||||| |||||||| || ||||| || || ||| | ||||| | |||||||| || |||||||||||| |||| || ||| || |
|
|
| T |
14869743 |
agatgattctgttctctatgttagttttgggagcatgaacaagttccctactcctcagcttgttgaaatagctcatgcacttgaacattctggccatgat |
14869842 |
T |
|
| Q |
331 |
ttcatttgggttgtt |
345 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
14869843 |
ttcatttgggttgtt |
14869857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 292 - 345
Target Start/End: Complemental strand, 16908861 - 16908808
Alignment:
| Q |
292 |
gttgaaattgcacatgcacttgaagattcaggtcataatttcatttgggttgtt |
345 |
Q |
| |
|
|||||||| || ||||||||||||||||| || ||| ||||||||||||||||| |
|
|
| T |
16908861 |
gttgaaatagctcatgcacttgaagattctggccatgatttcatttgggttgtt |
16908808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 461
Target Start/End: Complemental strand, 16908732 - 16908689
Alignment:
| Q |
418 |
aaaggctatttgatttggggatgggcaccacagcttttgatact |
461 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||| ||||||| |
|
|
| T |
16908732 |
aaaggctatttgatatggggttgggcaccacagcttctgatact |
16908689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University