View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19133_high_8 (Length: 474)

Name: NF19133_high_8

Description: NF19133

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF19133_high_8

[»] chr6 (5 HSPs)

Alignment Details

Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 5)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 315; E-Value: 1e-177

Query Start/End: Original strand, 130 - 474

Target Start/End: Original strand, 29001917 - 29002258

Alignment:

Q	130	gttgtttatgtcaaagactctgaattgttctgtgacgaattcatcactcacccatcacagaaaaaatgcagcaaggaggactattattccttgacagatt	229	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	29001917	gttgttgatgtcaaagactctgaattgttctgtgacgaattcatcactcacccatcacagaaaaaatgcagcaaggaggactatt---ccttgacagatt	29002013	T

Q	230	ctgatgataaagttaaagactttgaattgttcttcaacaaattcatcactgatccaatacaggaaaaacgctgcaacgattataactccccggattccag	329	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|
T	29002014	ctgatgataaagttaaagactttgaattgttcttcaacaaattcatcactgatccaatacaggaaaaacgctgcaacgattataactccccggattccgg	29002113	T

Q	330	cgataaaggtgatgatgacagtttggaagcaacatggaaagctataatggaaggacaggagaaaacaaagaagccatatctaaagaaaagtgacacttgg	429	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	29002114	cgataaaggtgatgatgacagtttggaagcaacatggaaagctataatggaaggacaagagaaaacaaagaagccatatctaaagaaaagtgacacttgg	29002213	T

Q	430	actgcaaggattgtgaaagcagaaccatttcgtaacaatggtggt	474	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	29002214	actgcaaggattgtgaaagccgaaccatttcgtaacaatggtggt	29002258	T

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Target: chr6; HSP #2

Raw Score: 144; E-Value: 2e-75

Query Start/End: Original strand, 219 - 470

Target Start/End: Original strand, 28962280 - 28962531

Alignment:

Q	219	cttgacagattctgatgataaagttaaagactttgaattgttcttcaacaaattcatcactgatccaatacaggaaaaacgctgcaacgattataactcc	318	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28962280	cttgccagattctgacgacaaagttaaagacttcagattattctgcaacaaattcatcgatgatccatcaccggaaaaatgttgcaacgattataacttg	28962379	T

Q	319	ccggattccagcgataaaggtgatgatgacagtttggaagcaacatggaaagctataatggaaggacaggagaaaacaaagaagccatatctaaagaaaa	418	Q
		\|\|\|\|\| \|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|
T	28962380	ccggactcaggtgataaaggtgatgatgacagtttagaagcaacatggaaagcaataatggaagcacaggagaaaacaaagaagccacatctgaagaaaa	28962479	T

Q	419	gtgacacttggactgcaaggattgtgaaagcagaaccatttcgtaacaatgg	470	Q
		\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28962480	gtggcacttggactgcaaggattgtgaaagcagaaccatttcgtaacaatgg	28962531	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3

Raw Score: 59; E-Value: 8e-25

Query Start/End: Original strand, 18 - 76

Target Start/End: Original strand, 29001805 - 29001863

Alignment:

Q	18	cattttagaaactaccaccaatccaattgagcaagaaaaccaaaccaatgaaccacatc	76	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	29001805	cattttagaaactaccaccaatccaattgagcaagaaaaccaaaccaatgaaccacatc	29001863	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4

Raw Score: 51; E-Value: 5e-20

Query Start/End: Original strand, 18 - 76

Target Start/End: Original strand, 28962091 - 28962149

Alignment:

Q	18	cattttagaaactaccaccaatccaattgagcaagaaaaccaaaccaatgaaccacatc	76	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28962091	cattttagaaactaccaccaacccaattgagctagaaaaccaaaccaatgaaccacatc	28962149	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5

Raw Score: 33; E-Value: 0.000000003

Query Start/End: Original strand, 241 - 297

Target Start/End: Original strand, 28962206 - 28962262

Alignment:

Q	241	gttaaagactttgaattgttcttcaacaaattcatcactgatccaatacaggaaaaa	297	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \| \|\|\|\|\|\|\|
T	28962206	gttaaagactctgaattgttccacaacaaattcatcactgatccgattccggaaaaa	28962262	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]