View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19133_low_10 (Length: 462)
Name: NF19133_low_10
Description: NF19133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19133_low_10 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 454; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 50399665 - 50400126
Alignment:
| Q |
1 |
ttctcacaaatggatgatcaactacttgatgcaatatgcgagcgattggtatcatccttgagtactcaaggcacatacattgtcagagaaggagatccag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50399665 |
ttctcacaaatggatgatcaactacttgatgcaatatgcgagcgattggtatcatccttgagtactcaaggcacatacattgtcagagaaggagatccag |
50399764 |
T |
|
| Q |
101 |
ttaccgagatgctttttatcatcagagggagacttgaaagctcaaccacaaatgggggcagaactggtttctttaactctattaccttaaagcctggtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50399765 |
ttaccgagatgctttttatcatcagagggagacttgaaagctcaaccacaaatgggggcagaactggtttctttaactctattaccttaaagcctggtga |
50399864 |
T |
|
| Q |
201 |
tttctgtggagaagagttacttgcttgggcattgcttccaaaatctactctcaacttgccttcttctacgagaacagttaaatctcttgttgaagttgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
50399865 |
tttctgtggagaagagttacttgcttgggcattgcttccaaaatctactctcaacttgccttcttctacgagaacagttaaagctcttgttgaagttgaa |
50399964 |
T |
|
| Q |
301 |
gcctttgaacttagagcagaggatcttaaatttgtcgcaaatcagtttcgacgtctccacagcaagaagttacagcatacattccgtttctactcttacc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50399965 |
gcctttgaacttagagcagaggatcttaaatttgtcgcaaatcagtttcgacgtctccacagcaagaagttacagcatacattccgtttctactcttacc |
50400064 |
T |
|
| Q |
401 |
attggaggacgtgggctgcttgtttcattcaggctgattggcgccggttcaagaagagagca |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
50400065 |
attggaggacgtgggctgcttgtttcattcaggctgcttggcgccggttcaagaagagagca |
50400126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 40678124 - 40678245
Alignment:
| Q |
7 |
caaatggatgatcaactacttgatgcaatatgcgagcgattggtatcatccttgagtactcaaggcacatacattgtcagagaaggagatccagttaccg |
106 |
Q |
| |
|
|||||||||||||| || || ||||| |||||||| || || |||||||| |||| || ||||| ||||||| || |||||||| |||||||| | | |
|
|
| T |
40678124 |
caaatggatgatcagcttctagatgctatatgcgaacgtttagtatcatcattgaacacaaaaggctcatacatagttagagaaggtgatccagtgaaag |
40678223 |
T |
|
| Q |
107 |
agatgctttttatcatcagagg |
128 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
40678224 |
agatgctttttatcatcagagg |
40678245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 13112633 - 13112596
Alignment:
| Q |
1 |
ttctcacaaatggatgatcaactacttgatgcaatatg |
38 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13112633 |
ttctcacaaatggatgatcaactacttgatgcaatatg |
13112596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 24979320 - 24979762
Alignment:
| Q |
1 |
ttctcacaaatggatgatcaactacttgatgcaatatgcgagcgattggtatcatccttgagtactcaaggcacatacattgtcagagaaggagatccag |
100 |
Q |
| |
|
|||||||||||||||||||| || |||||||| ||||| ||||| ||||||| || | || |||| |||||| |||||||| | || || || || | |
|
|
| T |
24979320 |
ttctcacaaatggatgatcagcttcttgatgcgatatgtgagcggctggtatcttctctaagcactctaggcacctacattgttcgtgagggtgaccctg |
24979419 |
T |
|
| Q |
101 |
ttaccgagatgctttttatcatcagagggagacttgaaagctcaaccacaaatgggggcagaactggtttctttaactctattaccttaaagcctggtga |
200 |
Q |
| |
|
| || || ||| | |||||||| ||||| ||||| || || || || |||||||| ||| | ||||||||||| ||||| || | || | ||||| || |
|
|
| T |
24979420 |
taactgaaatgttgtttatcattagaggcagactagatagttctacaacaaatggtggccggactggtttcttcaactcaatcatattgagacctggaga |
24979519 |
T |
|
| Q |
201 |
tttctgtggagaagagttacttgcttgggcattgcttccaaaatctactctcaacttgccttcttctacgagaacagttaaatctcttgttgaagttgaa |
300 |
Q |
| |
|
||| ||||| || || ||||| |||||||| | || |||||||| || | || ||||| ||||| || || || |||||| | | ||| |||||| |
|
|
| T |
24979520 |
tttttgtggtgaggaactactttcttgggcactactcccaaaatcaaccatgaatttgccgtcttcaactaggacggttaaagccttaagtgaggttgaa |
24979619 |
T |
|
| Q |
301 |
gcctttgaacttagagcagaggatcttaaa-tttgtcgcaaatcagtttcgacgtctccacagcaagaagttacagcatacattccgtttctactcttac |
399 |
Q |
| |
|
|| |||| ||| |||| || || |||||| ||||| || || || ||| | || ||||||||||| ||| | ||||| || || || || |||||| || |
|
|
| T |
24979620 |
gcttttgctcttcgagctgaaga-cttaaagtttgttgctaaccaatttaggcgcctccacagcaaaaagctgcagcacacctttcgattttactctcac |
24979718 |
T |
|
| Q |
400 |
cattggaggacgtgggctgcttgtttcattcaggctgattggcg |
443 |
Q |
| |
|
||||||||||| ||||| |||||||| || || |||| |||||| |
|
|
| T |
24979719 |
cattggaggacttgggccgcttgttttatacaagctgcttggcg |
24979762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University