View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19133_low_11 (Length: 448)
Name: NF19133_low_11
Description: NF19133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19133_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 11 - 431
Target Start/End: Complemental strand, 960550 - 960131
Alignment:
| Q |
11 |
agtgagatgaacaataaattggagtataatactgctttctctttagagtagctccaaaactcagcttcacataaagggttacaattatacttttaatcca |
110 |
Q |
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| T |
960550 |
agtgaaatgaacaataaatttaagtataatactgctttctctttagagaagctccaaaactcaacttcatataaatggttaca-ttatacttttaatcca |
960452 |
T |
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| Q |
111 |
acaataaattgatttaaatggtaagagattagagctccttaaataagtggttagagttcaatttccagctcttgcatatgaaaaaatcggttgagatgag |
210 |
Q |
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| T |
960451 |
acaataaattggtttaaatggtaagagattagagctccttaaacaagtggttagggttcaatcttcagctcttgcatatgaaaaaatggattgagatgag |
960352 |
T |
|
| Q |
211 |
agaacttatcttatgtgtgtgacatatcctctgatagagattaataatcattgttaaccaatggtaaaaacttcgtacatagtaaaaattgattgagata |
310 |
Q |
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| T |
960351 |
agaacttatcttatgtgtctcacatatcctcggatagagattaataatcattgttaaccaacggtaaaaacttcgtacatagtaaaaatcgattgagatg |
960252 |
T |
|
| Q |
311 |
ggagaactcatcttacgtgtatgatttatagaaagtgaatactcacacatatgacaaaatcatgtttagaattctaaaatcatgtttacctctcatagaa |
410 |
Q |
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|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
960251 |
ggagaactcatcttacatgtatgatttatggaaagtgaatactcacacatatgacaaaatcatgtttagaattctaaaatcatgtttacctctcatagaa |
960152 |
T |
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| Q |
411 |
agtgaatccaatcatataatt |
431 |
Q |
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| T |
960151 |
agtgaatccaatcatataatt |
960131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 140
Target Start/End: Original strand, 5632889 - 5632921
Alignment:
| Q |
108 |
ccaacaataaattgatttaaatggtaagagatt |
140 |
Q |
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| T |
5632889 |
ccaacaataaattgatttaaatggtaagagatt |
5632921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 152
Target Start/End: Original strand, 9798034 - 9798076
Alignment:
| Q |
110 |
aacaataaattgatttaaatggtaagagattagagctccttaa |
152 |
Q |
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| T |
9798034 |
aacaataaattaatttaagtggtaagagatttgagctccttaa |
9798076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 140
Target Start/End: Original strand, 6743224 - 6743256
Alignment:
| Q |
108 |
ccaacaataaattgatttaaatggtaagagatt |
140 |
Q |
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| T |
6743224 |
ccaacaataaattgattcaaatggtaagagatt |
6743256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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