View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19133_low_13 (Length: 402)
Name: NF19133_low_13
Description: NF19133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19133_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 49 - 384
Target Start/End: Complemental strand, 6031802 - 6031454
Alignment:
| Q |
49 |
attagaagaagcattttgatcaggggtaagaaaagtaaaaggagggtatgagtgtgaagaagaagatgaattaggattataacaagggtaaggacctaaa |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6031802 |
attagaagaagcattttgatcaggggtaagaaaagtaaaaggagggtatgagtgtgaagaagaagatgaattaggattataacaagggtaaggacctaaa |
6031703 |
T |
|
| Q |
149 |
gagcaataagttgaaggaaacatttgaagat-------------gaaaaaccctagtttcttgtttcacaacnnnnnnngaacaagaggtatatagctat |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6031702 |
gagcaataagttgaaggaaacatttgaagattgactcaaatggagaaaaaccctagtttcttgtttcacaacaaaaaaagaacaagaggtatatagctat |
6031603 |
T |
|
| Q |
236 |
gttcttatgggttatagtgaagtagcttcctaaaaacacctttttacacggatattaattttttagaggaaattaactacttactagttaaggactatag |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6031602 |
gttcttatgggttatagtgaagtagcttcctaaaaacacctttttacacggatattaattttttagaggaaatgaactacttactagttaaggactatag |
6031503 |
T |
|
| Q |
336 |
tgaacctagaagagnnnnnnngtggtttgaaagaaattgatgatgatag |
384 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6031502 |
tgaacctagaagagaaaaaaagtggtttgaaagaaattgatgatgatag |
6031454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University