View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19133_low_15 (Length: 385)
Name: NF19133_low_15
Description: NF19133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19133_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 180; Significance: 4e-97; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 39 - 226
Target Start/End: Original strand, 47389538 - 47389725
Alignment:
| Q |
39 |
taatcagtagcattagggcattgattagcactttcataaagtcacttacacctttattaataagaaaatacctgtagaatataagttaggatcatcaaga |
138 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47389538 |
taatcagtagcattagggcattgatcagcactttcttaaagtcacttacacctttattaataagaaaatacctgtagaatataagttaggatcatcaaga |
47389637 |
T |
|
| Q |
139 |
attgaagcaagcaaacaatattttcacatggctactaaaataaatactcatgaatatgccgcaaccaaatacactacaaagtgatata |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47389638 |
attgaagcaagcaaacaatattttcacatggctactaaaataaatactcatgaatatgccgcaaccaaatacactacaaagtgatata |
47389725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 227 - 369
Target Start/End: Original strand, 47389798 - 47389940
Alignment:
| Q |
227 |
ctacggtgaacatagtagcaatacatgcagactgttcagttttatttattcataaaaaacaatccttaaattctcttatttccgctattgaggcaacatg |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47389798 |
ctacggtgaacatagtagcaatacatgcagactgttctgttttatttattcataaaaaacaatccttaaattctcttatttccgctattgaggcaacatg |
47389897 |
T |
|
| Q |
327 |
tgctggccggagctggaatagcggccgctatttccctaatagg |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47389898 |
tgctggccggagctggaatagcggccgctatttccctaatagg |
47389940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 39 - 226
Target Start/End: Complemental strand, 40626271 - 40626083
Alignment:
| Q |
39 |
taatcagtagcattagggcattgattagcactttcataaagtcacttacacctttattaataagaaaatacctgtagaatataagttaggatcatcaaga |
138 |
Q |
| |
|
||||||||| |||||||| |||||||| ||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
40626271 |
taatcagtaccattagggtattgattaccactttcttaaagtcacttacgcctttattaataagaaaataactgtagaatataagttaggatcatcaaga |
40626172 |
T |
|
| Q |
139 |
attgaagcaagcaaac-aatattttcacatggctactaaaataaatactcatgaatatgccgcaaccaaatacactacaaagtgatata |
226 |
Q |
| |
|
|||||||||||||||| | | ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
40626171 |
attgaagcaagcaaacgagttttttcacatggctactaaaataaatacccatgaatatgcagcaaccaaatacactaaaaagtgatata |
40626083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 292 - 369
Target Start/End: Complemental strand, 40625929 - 40625852
Alignment:
| Q |
292 |
ttaaattctcttatttccgctattgaggcaacatgtgctggccggagctggaatagcggccgctatttccctaatagg |
369 |
Q |
| |
|
||||| ||||||||||| ||||||| | ||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40625929 |
ttaaactctcttatttctgctattgcctctacatgtgctagccggagctggaatagcggccactatttccctaatagg |
40625852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 47389417 - 47389458
Alignment:
| Q |
1 |
aattaaatacagtcaacaaaaagaaaattcagatgtgataat |
42 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
47389417 |
aattaaatacagtcaacaaaaagaaaattcaggtgtgataat |
47389458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40626393 - 40626352
Alignment:
| Q |
1 |
aattaaatacagtcaacaaaaagaaaattcagatgtgataat |
42 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
40626393 |
aattaaataccgtcaacaaaaagaaaattcaggtgtgataat |
40626352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University