View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19133_low_18 (Length: 339)
Name: NF19133_low_18
Description: NF19133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19133_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 36135432 - 36135089
Alignment:
| Q |
1 |
taagagattttgcaaaataaaaaatatggttgaaaatcacaacttcccataataatatattacctcctccnnnnnnncaaagtgagcataaaccactcaa |
100 |
Q |
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| T |
36135432 |
taagagatcttgcaaaataaaaaatatggttgaaaatcacaacttcccataataatatattacctcctccaaaaaa-caaagtgagcataaaccactcaa |
36135334 |
T |
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| Q |
101 |
ttggttgaaagatatgtcaattacaaatttttcaaccaaacacttaatgatcttcacttgccattgaacaagaagaagaaacacgcgaaggttgagcaat |
200 |
Q |
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| T |
36135333 |
ttggttgaaagatatgtcaattacaaatttttcaaccaaacacttaatgatcttcacttgccattgaacaagaagaagaaacacgcgaaggttgagaaat |
36135234 |
T |
|
| Q |
201 |
atttttatcaattacttaaacaacttttgtatttggac--------------tatatacacacacattattttctctttatctttgtttccattatatta |
286 |
Q |
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| T |
36135233 |
acttttatcaattacttaaacaacttttatatttggacactcataaattctatatatacacacacattattttctctttatctttgtttccattatatta |
36135134 |
T |
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| Q |
287 |
ttaacatatcacatttatcacatcactctatctatttttcttctc |
331 |
Q |
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| T |
36135133 |
ttaacatatcacatttatcacatcactctatctatttttcttctc |
36135089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 3 - 210
Target Start/End: Complemental strand, 41336862 - 41336660
Alignment:
| Q |
3 |
agagattttgcaaaataaaaaa-tatggttgaaaatcacaacttcccataataatatattacctcctccnnnnnnncaaagtgagcataaaccactcaat |
101 |
Q |
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| T |
41336862 |
agagatcttgcaaaataaaaaaatatgcttgaaa-tcacaacttactataataa-atattacctcgtccaaaaaa-caaagtgagcataaaccactcaat |
41336766 |
T |
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| Q |
102 |
tggttgaaagatatgtcaattacaaatttttcaaccaaacacttaatgatcttcacttgccattgaacaagaagaagaaacacgcgaaggttgagcaata |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||| || || ||||||||||||||||| |||| |
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| T |
41336765 |
tggttgaaagatatgtcaattacaaatttttcaaccaagcacttaatgatcttcacctggcattgaac---aacaaaaaacacgcgaaggttgaaaaata |
41336669 |
T |
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| Q |
202 |
tttttatca |
210 |
Q |
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||||||||| |
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| T |
41336668 |
tttttatca |
41336660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 6463213 - 6463169
Alignment:
| Q |
267 |
tctttgtttccattatattattaacatatcacatttatcacatca |
311 |
Q |
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| T |
6463213 |
tcttttttcccattacatcattaacatatcacatttatcacatca |
6463169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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