View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19133_low_20 (Length: 314)

Name: NF19133_low_20
Description: NF19133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19133_low_20
NF19133_low_20
[»] chr2 (5 HSPs)
chr2 (139-304)||(35969560-35969736)
chr2 (84-252)||(2590156-2590334)
chr2 (198-252)||(18739390-18739444)
chr2 (84-119)||(34564412-34564447)
chr2 (84-130)||(18739510-18739556)
[»] chr8 (4 HSPs)
chr8 (84-252)||(21185545-21185724)
chr8 (84-142)||(1789290-1789349)
chr8 (198-252)||(1789183-1789237)
chr8 (84-130)||(4327299-4327345)
[»] chr6 (3 HSPs)
chr6 (84-130)||(6950124-6950170)
chr6 (84-142)||(19698231-19698290)
chr6 (198-252)||(19698124-19698178)
[»] chr1 (2 HSPs)
chr1 (84-130)||(1968487-1968533)
chr1 (84-129)||(1953405-1953450)
[»] scaffold0014 (3 HSPs)
scaffold0014 (84-142)||(86692-86751)
scaffold0014 (198-252)||(82400-82456)
scaffold0014 (198-252)||(86804-86860)
[»] chr7 (3 HSPs)
chr7 (84-130)||(11673669-11673715)
chr7 (201-252)||(11673786-11673837)
chr7 (89-130)||(3850984-3851025)
[»] chr3 (3 HSPs)
chr3 (84-130)||(42258199-42258245)
chr3 (86-129)||(11634609-11634652)
chr3 (87-130)||(11641136-11641179)


Alignment Details
Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 139 - 304
Target Start/End: Complemental strand, 35969736 - 35969560
Alignment:
Q  139 gttgatgtttgatagttgggtcaaagactaaaatatcattccctattatcaagcctcatt-----------aaggaacaactcaccataactctcatgta 227  Q
    |||||||||||| |||||| |||||||||||||||||||| |||||||| ||||||||||           |||||||||||||||| |||||  |||||    
T  35969736 gttgatgtttgagagttggctcaaagactaaaatatcatttcctattattaagcctcatttttcttagtataaggaacaactcaccacaactccgatgta 35969637  T
Q  228 tatatccttcatttctttctccaaataaagcatgtataactcactaaagtacactgaaacatccttcatttttcttc 304  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35969636 tatatccttcatttctttctctaaataaagcacgtataactcactaaagtacactgaaacatccttcatttttcttc 35969560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 84 - 252
Target Start/End: Original strand, 2590156 - 2590334
Alignment:
Q  84 accatgtgatatttacttagtcaaagccttatttgtcaaacttatttgtttaaccgttgatgtttgatagttgggtcaaagactaaaatatcattcccta 183  Q
    ||||||||||||||||||||||||| |||||||||||| | |||||| | |||||||| ||||||||| ||||| |||||  ||||||| ||||||||||    
T  2590156 accatgtgatatttacttagtcaaaaccttatttgtcacaattattt-tataaccgttcatgtttgatggttggatcaaatgctaaaatctcattcccta 2590254  T
Q  184 ttatcaagcctcat-----------taaggaacaactcaccataactctcatgtatatatccttcatttctttctccaaa 252  Q
    || | | ||||| |           ||||||||||||||||  |||||||||| ||||||||||| ||| ||||||||||    
T  2590255 ttgttatgcctcttttcccttaatataaggaacaactcaccgcaactctcatgaatatatccttcttttatttctccaaa 2590334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 198 - 252
Target Start/End: Complemental strand, 18739444 - 18739390
Alignment:
Q  198 taaggaacaactcaccataactctcatgtatatatccttcatttctttctccaaa 252  Q
    ||||||||||||||||| ||||||||||||||||| |||| ||| ||||||||||    
T  18739444 taaggaacaactcaccacaactctcatgtatatattcttcttttatttctccaaa 18739390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 119
Target Start/End: Original strand, 34564412 - 34564447
Alignment:
Q  84 accatgtgatatttacttagtcaaagccttatttgt 119  Q
    ||||||||||||||||||||||||||||||||||||    
T  34564412 accatgtgatatttacttagtcaaagccttatttgt 34564447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 130
Target Start/End: Complemental strand, 18739556 - 18739510
Alignment:
Q  84 accatgtgatatttacttagtcaaagccttatttgtcaaacttattt 130  Q
    ||||||||||||||||||||||||| |||||||||||| | ||||||    
T  18739556 accatgtgatatttacttagtcaaaaccttatttgtcacaattattt 18739510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 84 - 252
Target Start/End: Complemental strand, 21185724 - 21185545
Alignment:
Q  84 accatgtgatatttacttagtcaaagccttatttgtcaaacttatttgtttaaccgttgatgtttgatagttgggtcaaagactaaaatatcattcccta 183  Q
    ||||||||||||||||||||||||| |||||||||||| | |||||| | |||| ||||||||||   |||| |||||||| || ||||  |||||||||    
T  21185724 accatgtgatatttacttagtcaaaaccttatttgtcatatttatttatgtaacggttgatgtttatcagtttggtcaaaggcttaaatcacattcccta 21185625  T
Q  184 ttatcaagcctcatt-----------aaggaacaactcaccataactctcatgtatatatccttcatttctttctccaaa 252  Q
    || | | ||||||||           |||||||||||||||| |||| | ||| ||||||||||| ||| ||||||||||    
T  21185624 ttgttatgcctcatttcccttaatacaaggaacaactcaccacaactttaatgaatatatccttcttttatttctccaaa 21185545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 1789349 - 1789290
Alignment:
Q  84 accatgtgatatttacttagtcaaagccttatttgtcaaacttatttgtt-taaccgttg 142  Q
    |||||||||||||||||||||||||||||||||||||| | |||||| || |||||||||    
T  1789349 accatgtgatatttacttagtcaaagccttatttgtcacatttattttttataaccgttg 1789290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 252
Target Start/End: Complemental strand, 1789237 - 1789183
Alignment:
Q  198 taaggaacaactcaccataactctcatgtatatatccttcatttctttctccaaa 252  Q
    ||||||||||||||||| || |||||||||||||| |||| ||| ||||||||||    
T  1789237 taaggaacaactcaccacaaatctcatgtatatattcttcttttatttctccaaa 1789183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 130
Target Start/End: Complemental strand, 4327345 - 4327299
Alignment:
Q  84 accatgtgatatttacttagtcaaagccttatttgtcaaacttattt 130  Q
    ||||||||||||||||||||||||| ||||||||| |||| ||||||    
T  4327345 accatgtgatatttacttagtcaaaaccttatttgccaaatttattt 4327299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 130
Target Start/End: Complemental strand, 6950170 - 6950124
Alignment:
Q  84 accatgtgatatttacttagtcaaagccttatttgtcaaacttattt 130  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  6950170 accatgtgatatttacttagtcaaagccttatttgtcaaatttattt 6950124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 19698290 - 19698231
Alignment:
Q  84 accatgtgatatttacttagtcaaagccttatttgtcaaacttatttgtt-taaccgttg 142  Q
    ||||||| |||||||||||||||||||||||||||||| | |||||| || |||||||||    
T  19698290 accatgttatatttacttagtcaaagccttatttgtcacaattattttttataaccgttg 19698231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 252
Target Start/End: Complemental strand, 19698178 - 19698124
Alignment:
Q  198 taaggaacaactcaccataactctcatgtatatatccttcatttctttctccaaa 252  Q
    ||||||||||||||||| |||| |||||||||||| |||| ||| ||||||||||    
T  19698178 taaggaacaactcaccacaactttcatgtatatattcttcttttatttctccaaa 19698124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 84 - 130
Target Start/End: Original strand, 1968487 - 1968533
Alignment:
Q  84 accatgtgatatttacttagtcaaagccttatttgtcaaacttattt 130  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||    
T  1968487 accatgtgatatttacttagtcaaagccttatttatcaaatttattt 1968533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 129
Target Start/End: Original strand, 1953405 - 1953450
Alignment:
Q  84 accatgtgatatttacttagtcaaagccttatttgtcaaacttatt 129  Q
    ||||||||||||||||| |||||||| || |||||||||| |||||    
T  1953405 accatgtgatatttactaagtcaaagtctcatttgtcaaatttatt 1953450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 142
Target Start/End: Original strand, 86692 - 86751
Alignment:
Q  84 accatgtgatatttacttagtcaaagccttatttgtcaaacttatttgtt-taaccgttg 142  Q
    ||||||||||||||||||||||||||||||| |||||| | |||||| || |||||||||    
T  86692 accatgtgatatttacttagtcaaagccttacttgtcacaattattttttataaccgttg 86751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 252
Target Start/End: Original strand, 82400 - 82456
Alignment:
Q  198 taaggaacaactcaccataactctc--atgtatatatccttcatttctttctccaaa 252  Q
    ||||||||||||||||| |||||||  |||||||||| |||| ||| ||||||||||    
T  82400 taaggaacaactcaccacaactctcgtatgtatatattcttcttttatttctccaaa 82456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 252
Target Start/End: Original strand, 86804 - 86860
Alignment:
Q  198 taaggaacaactcaccataactctc--atgtatatatccttcatttctttctccaaa 252  Q
    ||||||||||||||||| |||||||  |||||||||| |||| ||| ||||||||||    
T  86804 taaggaacaactcaccacaactctcatatgtatatattcttcttttatttctccaaa 86860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 130
Target Start/End: Original strand, 11673669 - 11673715
Alignment:
Q  84 accatgtgatatttacttagtcaaagccttatttgtcaaacttattt 130  Q
    |||||||||||||||||||||||||| ||||||||||| | ||||||    
T  11673669 accatgtgatatttacttagtcaaagtcttatttgtcacaattattt 11673715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 252
Target Start/End: Original strand, 11673786 - 11673837
Alignment:
Q  201 ggaacaactcaccataactctcatgtatatatccttcatttctttctccaaa 252  Q
    |||||||||||||| |||||| |||||||||| |||| ||| ||||||||||    
T  11673786 ggaacaactcaccacaactctgatgtatatattcttcttttatttctccaaa 11673837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 130
Target Start/End: Complemental strand, 3851025 - 3850984
Alignment:
Q  89 gtgatatttacttagtcaaagccttatttgtcaaacttattt 130  Q
    ||||||||||||||||||||| ||||||| ||||| ||||||    
T  3851025 gtgatatttacttagtcaaagtcttatttatcaaatttattt 3850984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 130
Target Start/End: Complemental strand, 42258245 - 42258199
Alignment:
Q  84 accatgtgatatttacttagtcaaagccttatttgtcaaacttattt 130  Q
    |||||||||||||||| ||||||||||||||||| ||||| ||||||    
T  42258245 accatgtgatatttacctagtcaaagccttatttatcaaatttattt 42258199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 11634652 - 11634609
Alignment:
Q  86 catgtgatatttacttagtcaaagccttatttgtcaaacttatt 129  Q
    |||||||||||||||||||||||||| ||||| ||||| |||||    
T  11634652 catgtgatatttacttagtcaaagccctatttatcaaatttatt 11634609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 130
Target Start/End: Complemental strand, 11641179 - 11641136
Alignment:
Q  87 atgtgatatttacttagtcaaagccttatttgtcaaacttattt 130  Q
    |||||||||||| ||||||||||| |||||||||||| ||||||    
T  11641179 atgtgatatttatttagtcaaagcgttatttgtcaaatttattt 11641136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University