View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19133_low_26 (Length: 252)
Name: NF19133_low_26
Description: NF19133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19133_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 5994996 - 5994918
Alignment:
| Q |
158 |
aaatgaaagaaagtggaaaaggctatttgatttggggatgggcaccacagcttttgatacttgagaatcatgcaattgg |
236 |
Q |
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| T |
5994996 |
aaatgaaagaaagtggaaaaggctatttgatttggggatgggcaccacagcttttgatacttgagaatcatgcaattgg |
5994918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 5997133 - 5997247
Alignment:
| Q |
1 |
tcatcaggacacgtggtttgattttcaccaacgtgagaatag--tattgg----ttaagtgtcttcttgaaatctttgcatatgacacgagccccccttt |
94 |
Q |
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| T |
5997133 |
tcatcaggacacgtggtttgattttcaccaacgtgagtatagtatattggttaattaagtgtcttcttgaaatctttgtatatgacacgagcccccc-tt |
5997231 |
T |
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| Q |
95 |
cctctcatgagacata |
110 |
Q |
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| T |
5997232 |
cttctcatgagacata |
5997247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 5998058 - 5998121
Alignment:
| Q |
107 |
cataattcatttgagaggaatatatacaagagaaagtatctaaataagaagaaatgaaagaaag |
170 |
Q |
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| T |
5998058 |
cataattcatttaagaggaatatatacaagagaaagtatctaaataaaaagaaatgaaagaaag |
5998121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 16908732 - 16908689
Alignment:
| Q |
175 |
aaaggctatttgatttggggatgggcaccacagcttttgatact |
218 |
Q |
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| T |
16908732 |
aaaggctatttgatatggggttgggcaccacagcttctgatact |
16908689 |
T |
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