View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19133_low_30 (Length: 250)
Name: NF19133_low_30
Description: NF19133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19133_low_30 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 33659804 - 33659570
Alignment:
| Q |
16 |
atagaaactcaacatcattgaaaaaactaaaattcacttacctatatgcattagagtatggatttaacatgttttgatttatcatgtcatgattgcttgt |
115 |
Q |
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| T |
33659804 |
atagaaactcaacatcattgaaaaaactaaaattcacttacctatatgcattagagtatgaatttaacatgttttgatttatcatgtcatgattgcttgt |
33659705 |
T |
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| Q |
116 |
gggtgaaagaggttgaaagtttagagtgacaataaaatcagtgttttaagaaaaattatataactaaaaatacaaattttcattcataactaaaaattgt |
215 |
Q |
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| T |
33659704 |
gggtgaaagaggttgaaagtttagagtgacaatgaaatcagtgttttaagaaaaattatataactaaaaatacaacttttcattcataactaaaaattgt |
33659605 |
T |
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| Q |
216 |
agcaatattattattatttgaaattacaattttcc |
250 |
Q |
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| T |
33659604 |
agcaatattattattatttgaaattacaattttcc |
33659570 |
T |
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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 105 - 176
Target Start/End: Complemental strand, 38481707 - 38481636
Alignment:
| Q |
105 |
tgattgcttgtgggtgaaagaggttgaaagtttagagtgacaataaaatcagtgttttaagaaaaattatat |
176 |
Q |
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| T |
38481707 |
tgattgttagtgtgtgaaagatgatgaaaatttatagtgacaataaaatcagtgttttaagaaaatttatat |
38481636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 43653174 - 43653110
Alignment:
| Q |
16 |
atagaaactcaacatcattgaaaaaacta--aaattcacttacctatatgcattagagtatggat |
78 |
Q |
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| T |
43653174 |
atagaaattcaacatcattgaaaaaaggacgaaattcacttacctatttgcaatagactatggat |
43653110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 7721858 - 7721794
Alignment:
| Q |
114 |
gtgggtgaaagaggttgaaagtttagagtgacaataaaatcagtgttttaagaaaaattatataa |
178 |
Q |
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| T |
7721858 |
gtgggtgaaagagagtggaattttagagtgacaatgaaatcaagattttaagaaaatttatataa |
7721794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 144
Target Start/End: Complemental strand, 50507795 - 50507753
Alignment:
| Q |
102 |
tcatgattgcttgtgggtgaaagaggttgaaagtttagagtga |
144 |
Q |
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| T |
50507795 |
tcatgattgtttgtgggtgaaagaggatgaaattttagagtga |
50507753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 39713361 - 39713397
Alignment:
| Q |
112 |
ttgtgggtgaaagaggttgaaagtttagagtgacaat |
148 |
Q |
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| T |
39713361 |
ttgtgggtgaaagagattgaaattttagagtgacaat |
39713397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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