View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19133_low_33 (Length: 246)
Name: NF19133_low_33
Description: NF19133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19133_low_33 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 10 - 246
Target Start/End: Original strand, 21661021 - 21661254
Alignment:
| Q |
10 |
attattctttccattaattaggcacgtaaaagaaacattcaaacattcttggaagacaataacattatgctcaagcatcattgaacaaatttgtttctaa |
109 |
Q |
| |
|
|||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
21661021 |
attattcttttcattaattaggcacataaaagtaacattcaaacattcttggaagacaataacattatgctcaagcatcattcaacaaatttgtttctaa |
21661120 |
T |
|
| Q |
110 |
gcatctaagaaagtgtaaagcagattctaatgttttcattggaaattcactttcctcatcaatttccaactcataatcataagaaatcttcacattaacc |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21661121 |
gcatctaagaaagtgtaaagcagattctaatgttttcattggaaattcactttcc---tcaatttccaactcataatcataagaaatcttcacattaacc |
21661217 |
T |
|
| Q |
210 |
actgtcttatcttcttctatggtagatagcttgaaac |
246 |
Q |
| |
|
| ||||||||| |||||| |||||||||||||||||| |
|
|
| T |
21661218 |
attgtcttatcctcttctgtggtagatagcttgaaac |
21661254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University