View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19133_low_40 (Length: 222)
Name: NF19133_low_40
Description: NF19133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19133_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 37303657 - 37303757
Alignment:
| Q |
25 |
aaaaatcagatattttctccatgttatttgacttgcttgtatttgagttatttaaaaggaaagaaattgccactatttccggcaaaaggagatatcactt |
124 |
Q |
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| T |
37303657 |
aaaaatcagatattttctccatgttatttgacttgcttgtgtttgagttatttagaaggaaagaaattgccactatttccggcaaaaggagatatcactt |
37303756 |
T |
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| Q |
125 |
a |
125 |
Q |
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| T |
37303757 |
a |
37303757 |
T |
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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 52625299 - 52625368
Alignment:
| Q |
132 |
tttgatacagttaagttattatctttttcacggttgaaagctcaatatccaatgttagtttttgacctta |
201 |
Q |
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| T |
52625299 |
tttgataaagttaagctattatctttttcatggttgaaaactaaaagttcaatgttagattttgacctta |
52625368 |
T |
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