View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19133_low_43 (Length: 217)
Name: NF19133_low_43
Description: NF19133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19133_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 50647145 - 50647331
Alignment:
| Q |
16 |
aacaacaccaataccccatatattggtaatagggtcagcaacatcaacattgaaatgggggtcatcctctagagtctaatccttacaaacaatatcctcc |
115 |
Q |
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| T |
50647145 |
aacaacaccaataccccatatattggtaatagggtcagcaacatcaacattgaaatgagggtcatcctctagagtctaatccttacaaacaatatcctcc |
50647244 |
T |
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| Q |
116 |
acaagaaattgtttttcataaaaacaagacttgttacgagcaagccacatactataacataaagaaataacatataagatgacatct |
202 |
Q |
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| T |
50647245 |
acaagaaattgtttttcataaaaacaagacttgttacgagcaagccacatactataacataaagaaataacatataagatgacatct |
50647331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 96 - 202
Target Start/End: Complemental strand, 55445812 - 55445706
Alignment:
| Q |
96 |
ccttacaaacaatatcctccacaagaaattgtttttcataaaaacaagacttgttacgagcaagccacatactataacataaagaaataacatataagat |
195 |
Q |
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| T |
55445812 |
ccttacgaacaatatcctccgcaagaatttgtttcccatcaaaacatgatttattacgagcaaacctaataccataacataaagaaacaacatatgagat |
55445713 |
T |
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| Q |
196 |
gacatct |
202 |
Q |
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||||||| |
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| T |
55445712 |
gacatct |
55445706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 21112828 - 21112755
Alignment:
| Q |
136 |
aaaacaagacttgttacgagcaagccacatactataacataaagaaataacatataagatgacatctgatgatg |
209 |
Q |
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| T |
21112828 |
aaaacaagacttattatgagcaaaccaaataccataacataaagaaagaatatatcagatgatatctaatgatg |
21112755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 90 - 209
Target Start/End: Original strand, 24199948 - 24200067
Alignment:
| Q |
90 |
tctaatccttacaaacaatatcctccacaagaaattgtttttcataaaaacaagacttgttacgagcaagccacatactataacataaagaaataacata |
189 |
Q |
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||||| ||||||||||| |||||||||||| ||||||||| |||| ||| | | || ||||||| || ||| |||||| | |||||||||| |||||| |
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| T |
24199948 |
tctaagccttacaaacagtatcctccacaaaaaattgtttcccatacaaaacataattattacgagaaacccaaatactagagcataaagaaagaacata |
24200047 |
T |
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| Q |
190 |
taagatgacatctgatgatg |
209 |
Q |
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| T |
24200048 |
tgagatgacatctaatgatg |
24200067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 196
Target Start/End: Complemental strand, 42514738 - 42514638
Alignment:
| Q |
96 |
ccttacaaacaatatcctccacaagaaattgtttttcataaaaacaagacttgttacgagcaagccacatactataacataaagaaataacatataagat |
195 |
Q |
| |
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|||| |||||||||||||||||||| | |||||| ||| |||||||||||||| | |||||| || |||| ||||||| |||||||||| || |||| |
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| T |
42514738 |
ccttgcaaacaatatcctccacaaggatttgtttcccatcaaaacaagacttgtgaagagcaaagcaaataccgtaacatagagaaataacagatgagat |
42514639 |
T |
|
| Q |
196 |
g |
196 |
Q |
| |
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| |
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| T |
42514638 |
g |
42514638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 209
Target Start/End: Complemental strand, 5554365 - 5554305
Alignment:
| Q |
149 |
ttacgagcaagccacatactataacataaagaaataacatataagatgacatctgatgatg |
209 |
Q |
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|||||||||| ||| |||| |||||||||||||| ||||||| ||| ||||||| |||||| |
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| T |
5554365 |
ttacgagcaaaccaaataccataacataaagaaagaacatatgagacgacatctaatgatg |
5554305 |
T |
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