View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19134_high_5 (Length: 272)
Name: NF19134_high_5
Description: NF19134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19134_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 11582092 - 11581856
Alignment:
| Q |
17 |
aggtacaatcttagatgtaaaaatacctacatattttttcttatagggtttagtttatataatttttggttcataacatgtgatttaatgcattacattg |
116 |
Q |
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| T |
11582092 |
aggtacaatcttagatgtaaaaatacctacatattttttcttatagggtttagtttatatgatttttggttcataacatgtcattt-atgcattacattg |
11581994 |
T |
|
| Q |
117 |
aattgatgatttatgatttaannnnnnnnnngggattcgatcctctttggtccctccatacccgtcgtacaacccactatattaatccagatagagagta |
216 |
Q |
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| T |
11581993 |
aattgatgatttgtgatttaattttatttttgagattcgatcctctttggtccctccatacccgtcgtacaacttactatattaatccagatagagagta |
11581894 |
T |
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| Q |
217 |
ttggcatctcaatggttagattaattacatggaacata |
254 |
Q |
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||| |||||||||| ||||||||||||||||||||||| |
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| T |
11581893 |
ttgacatctcaatgtttagattaattacatggaacata |
11581856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 11588410 - 11588291
Alignment:
| Q |
17 |
aggtacaatcttagatgtaaaaatacctacatattttttcttatagggtttagtttatataatttttggttcataacatgtgatttaatgcattacattg |
116 |
Q |
| |
|
||||||||| |||||||||||| || ||| ||||| || ||||| ||||| | ||| ||||||||||||| |||| | |||||| ||||| ||| |
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| T |
11588410 |
aggtacaatgttagatgtaaaattatttacgaattttatcatatagt-tttaggctctatgatttttggttcatgacatttcatttaactcattatattt |
11588312 |
T |
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| Q |
117 |
aattgatgatttatgatttaa |
137 |
Q |
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||||||||||||||||||||| |
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| T |
11588311 |
aattgatgatttatgatttaa |
11588291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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