View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19134_low_6 (Length: 255)

Name: NF19134_low_6

Description: NF19134

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF19134_low_6

[»] chr7 (2 HSPs)

Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 2)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 153; E-Value: 3e-81

Query Start/End: Original strand, 69 - 241

Target Start/End: Original strand, 6361085 - 6361256

Alignment:

Q	69	atctgcttgcaagtgtgctaacattaatattgtgagctagctgcagtgtgctatgatatcattgaagtgtgcaggtgctaacttaagtgtgaatatctgt	168	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|
T	6361085	atctgcttgcaagtgtgctaacattaatattgtgagctagctgcagtgtgctatgatatcattgaagtgtgcaggtgctaac-taagtgtaaatatctgt	6361183	T

Q	169	acattaattacaaataatatttgttaggattatccaatatatcaagtagaacctctccatacatgctgttact	241	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	6361184	acattaattacaaataatatttgttaggattatccaatatatcaagtagaacctctacatacatgttgttact	6361256	T

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Target: chr7; HSP #2

Raw Score: 54; E-Value: 4e-22

Query Start/End: Original strand, 15 - 68

Target Start/End: Original strand, 6361006 - 6361059

Alignment:

Q	15	tataatcatggagatatcttacctactctagctgcaagtgagttggccgtgagt	68	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	6361006	tataatcatggagatatcttacctactctagctgcaagtgagttggccgtgagt	6361059	T

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