View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19135_low_2 (Length: 370)
Name: NF19135_low_2
Description: NF19135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19135_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 22956944 - 22956607
Alignment:
| Q |
1 |
ggttaaggaaaaataatagaatgatttttaatacttaattaattaagtaggtagttcacctaaccacgcatatgcggggaatggatttgctcaacaatac |
100 |
Q |
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| T |
22956944 |
ggttaaggaaaaataatagaatgatttttaatacttaattaattaagtaggtagttcacctaaccacgcatatgcggggaatggatttgctcaacaatac |
22956845 |
T |
|
| Q |
101 |
gtcaataaaacttgcaaacctttaatgcgtaagtaaataaaacttgatttttgtgtgaaaaagtactccataagtcaataaaacttgggcaaggctcaag |
200 |
Q |
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| T |
22956844 |
gtcaataaaacttgcaaacctttaatgcgtaagtaaataaaacttgatttttgtttgaaaaagtactccataagtcaataaaacttgggcaaggcccaag |
22956745 |
T |
|
| Q |
201 |
aggcctaaactataagctgctattttagggacatttgctaacttcaagaaaattcctataggttgttagaaaaggaaaaagcttaatggtacgatagttg |
300 |
Q |
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| T |
22956744 |
aggcctaaactataagctgctattttagggacatttgctaacttcaacaaaattcctataggttgttaggaaaggaaaaagcttaatggtacgatagttg |
22956645 |
T |
|
| Q |
301 |
agcgacgaaaagcaacgaatccactacaaccataggat |
338 |
Q |
| |
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| T |
22956644 |
agcgacgaaaagcaacgaatccactgcagccataggat |
22956607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 351
Target Start/End: Original strand, 42537917 - 42537953
Alignment:
| Q |
315 |
acgaatccactacaaccataggattatataccataac |
351 |
Q |
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| T |
42537917 |
acgaatccactgcagccataggattatataccataac |
42537953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 273 - 344
Target Start/End: Complemental strand, 50558486 - 50558415
Alignment:
| Q |
273 |
aggaaaaagcttaatggtacgatagttgagcgacgaaaagcaacgaatccactacaaccataggattatata |
344 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
50558486 |
aggaaaaagtttaatggtacgatagttgagcgacgaaaagcaacgaatccactgcagccataggattatata |
50558415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 351
Target Start/End: Complemental strand, 20761264 - 20761195
Alignment:
| Q |
282 |
cttaatggtacgatagttgagcgacgaaaagcaacgaatccactacaaccataggattatataccataac |
351 |
Q |
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| T |
20761264 |
cttaatggtacgatggttaaacaacaaaaagcaacgaattcactgcagccataggatcatatacaataac |
20761195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 272 - 351
Target Start/End: Original strand, 24053468 - 24053547
Alignment:
| Q |
272 |
aaggaaaaagcttaatggtacgatagttgagcgacgaaaagcaacgaatccactacaaccataggattatataccataac |
351 |
Q |
| |
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|||||||||| |||||||||| ||||||||| ||||||||||||||||||| || || |||||||||||||||||||||| |
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| T |
24053468 |
aaggaaaaagtttaatggtacaatagttgagtgacgaaaagcaacgaatcctctgcagccataggattatataccataac |
24053547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 270 - 343
Target Start/End: Original strand, 17724975 - 17725048
Alignment:
| Q |
270 |
aaaaggaaaaagcttaatggtacgatagttgagcgacgaaaagcaacgaatccactacaaccataggattatat |
343 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||||||||||| || ||||||||| |||| |
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| T |
17724975 |
aaaaggaaaaagcttaatggtacaatagttgaaagacgaaaagcaacgaatccactgcagccataggatcatat |
17725048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 275 - 344
Target Start/End: Original strand, 1933262 - 1933331
Alignment:
| Q |
275 |
gaaaaagcttaatggtacgatagttgagcgacgaaaagcaacgaatccactacaaccataggattatata |
344 |
Q |
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||||||||||||||||||||||| | |||| ||||| || ||||||||||||| |||||||||||||| |
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| T |
1933262 |
gaaaaagcttaatggtacgatagctaggcgaagaaaatcatcgaatccactacagtcataggattatata |
1933331 |
T |
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