View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19135_low_3 (Length: 323)
Name: NF19135_low_3
Description: NF19135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19135_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 4725159 - 4725044
Alignment:
| Q |
15 |
acttcaaacaattttcacagcaaggatgcagagaatgttatggactgaagctgaagacggatcgaagaagaaggctacacacctttcaaccgatgacgat |
114 |
Q |
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| T |
4725159 |
acttcaaacaattttcacagcaaggatgcagagaatgttatggactgaagctgaagacggatcgaagaagaaggctacacacctttcaaccgatgacgat |
4725060 |
T |
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| Q |
115 |
gaagacgatggtaatg |
130 |
Q |
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| T |
4725059 |
gaagacgatggtaatg |
4725044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 216 - 313
Target Start/End: Complemental strand, 4724958 - 4724861
Alignment:
| Q |
216 |
tttcttccgcaatttgaaggaaattttggatgagttcatgagacaacaattgcaaattgaagcacaatggatggaagcatttgaagctagagagaatg |
313 |
Q |
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| T |
4724958 |
tttcttccgcaatttgaaggaaattttggatgagttcatgagacaacaattgcaaattgaagcacaatggatggaagcatttgaagctagagagaatg |
4724861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 225 - 313
Target Start/End: Original strand, 25259387 - 25259475
Alignment:
| Q |
225 |
caatttgaaggaaattttggatgagttcatgagacaacaattgcaaattgaagcacaatggatggaagcatttgaagctagagagaatg |
313 |
Q |
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| T |
25259387 |
caatttgaaggagattcttgaggagtttatgaggcaacaaatgcaaatggaagctcaatggatggaagcatttgaagcaagagagaatg |
25259475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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