View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19135_low_4 (Length: 288)
Name: NF19135_low_4
Description: NF19135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19135_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 19299994 - 19300252
Alignment:
| Q |
18 |
tttacttggaaaagggaaatagaacttaattgaaaaactagtaaattgtcatcatgcttcaaagaagaacatgaaaagaaacaaattactcctaccaaat |
117 |
Q |
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| T |
19299994 |
tttacttggaaaagggaaatagaacttaattgaaaaactagtaaattgtcatcatgcttcaaagaagaacatgaaaagaaacaaattactcctaccaaat |
19300093 |
T |
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| Q |
118 |
aatgaatctaagaaaccatnnnnnnngtaccaaccaattacccacttgtctgtacattgtcattgctttcagcatatatgggataaagacaaaacctttt |
217 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
19300094 |
aatgaatctaagaaaccat-aaaaaagtaccaaccaattacccacttgtctgtacattgtcattgctttcatc--atatgggataaagacaaaacctttt |
19300190 |
T |
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| Q |
218 |
tcataattccttaac-aaaaaacatgcttcaaaatgatccaaaaccaaaacctttattcatc |
278 |
Q |
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| T |
19300191 |
tcataattccttaacaaaaaaacatgcttcaaaatgacccaaaaccaaaacctttattcatc |
19300252 |
T |
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