View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19135_low_6 (Length: 254)
Name: NF19135_low_6
Description: NF19135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19135_low_6 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 4 - 254
Target Start/End: Complemental strand, 2820340 - 2820090
Alignment:
| Q |
4 |
aataaaaccacattgattatcaaaacaaaagattaggggaatgataatgaattaaccattttcttagctgatgtgatccactattttcatacaagaatct |
103 |
Q |
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| T |
2820340 |
aataaaaccacatggattatcaaaacaaaagattaggggaatgataatgaattaaccattttcttagctgatgtgatccactattttcatacaagaatct |
2820241 |
T |
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| Q |
104 |
ggggatgacagggttagcaataagtttagcacaagttccattacttgttggcttatctcattttgaatcccatcaacggtcaaatcagctgaaacggttt |
203 |
Q |
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| T |
2820240 |
ggggatgacagggttagcaataagtttagcacaagttacattacttgttggcttatctcatcttgaatcccatcaacggtcaaatcagctgaaacggttt |
2820141 |
T |
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| Q |
204 |
tcaatccttccgaggctgcctttgaatgataatactctacaatggacaact |
254 |
Q |
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| T |
2820140 |
tcaatccctccggggctgcctttgaacaataatactctacaatggacaact |
2820090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 122 - 254
Target Start/End: Complemental strand, 2827392 - 2827260
Alignment:
| Q |
122 |
aataagtttagcacaagttccattacttgttggcttatctcattttgaatcccatcaacggtcaaatcagctgaaacggttttcaatccttccgaggctg |
221 |
Q |
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| T |
2827392 |
aataagtttggcacaagttacattacttgttggcttatctcattttgaatcccagcagctgtcaaatcagctgaaacggttttcgatccttctgaggctg |
2827293 |
T |
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| Q |
222 |
cctttgaatgataatactctacaatggacaact |
254 |
Q |
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| T |
2827292 |
cctttgaacgataatattttacaatggtcaact |
2827260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 2827673 - 2827550
Alignment:
| Q |
3 |
taataaaaccacattgattatcaaaacaaaagattaggggaatgataatgaattaaccattttcttagctgatgtgatccactattttcatacaagaatc |
102 |
Q |
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| T |
2827673 |
taataaaaccacatggattattaaaacaaaagattagggaaatgataatgaattaaccattttcctagctgatgtgatccagtattttcatacaagaatc |
2827574 |
T |
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| Q |
103 |
tgggga----tgacagggttagca |
122 |
Q |
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| T |
2827573 |
cggggacaattgacagggttagca |
2827550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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