View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19135_low_7 (Length: 253)
Name: NF19135_low_7
Description: NF19135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19135_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 7e-98; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 19835711 - 19835958
Alignment:
| Q |
1 |
gttagcaacctaatgcatatatgaaccaagagcaagaaaagttagaatgagcaagaaaagttagatcagttagtgctacaagttggatttcttcattatc |
100 |
Q |
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| T |
19835711 |
gttagcaaccttatgcatatatgaaccaagagcaagaaaagttagaatgagcaagaaaagttagatcagttagtgctacaagttggatttcttcattatc |
19835810 |
T |
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| Q |
101 |
catcaaaaatcatttagaatgctacaacaactaaagtgaacttatgattatatccttaccagtaaccacacacacacg-----tnnnnnnnnnggagggt |
195 |
Q |
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| T |
19835811 |
caccaaaaatcatttagaatgctacaacaactaaagtgaacttatgattatatccttaccagtaaccacatacacacgcaaaaaaaaaaaaaaagagggt |
19835910 |
T |
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| Q |
196 |
gtaaaaaattgagatgcaaccttgaagatgaagtcattgggtcctttg |
243 |
Q |
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| T |
19835911 |
gtaaaaaattgagatgcaaccttgaagatgaagtcattgggtcctttg |
19835958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 14554094 - 14554040
Alignment:
| Q |
189 |
ggagggtgtaaaaaattgagatgcaaccttgaagatgaagtcattgggtcctttg |
243 |
Q |
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| T |
14554094 |
ggagggtgtaaaaaattgagatgcaaccttaaagatgaactcattgggtcctttg |
14554040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 14554187 - 14554145
Alignment:
| Q |
3 |
tagcaacctaatgcatatatgaaccaagagcaagaaaagttag |
45 |
Q |
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| T |
14554187 |
tagcaaccttatgcatatatgaaccaagagcaagaaaagttag |
14554145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 90
Target Start/End: Complemental strand, 14554239 - 14554204
Alignment:
| Q |
55 |
gaaaagttagatcagttagtgctacaagttggattt |
90 |
Q |
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| T |
14554239 |
gaaaagttagatcagttagtgctacaagttggattt |
14554204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 88
Target Start/End: Original strand, 19835661 - 19835694
Alignment:
| Q |
55 |
gaaaagttagatcagttagtgctacaagttggat |
88 |
Q |
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| T |
19835661 |
gaaaagttagatcagttagtgctacaagttggat |
19835694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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