View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19136_high_4 (Length: 406)
Name: NF19136_high_4
Description: NF19136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19136_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 26 - 398
Target Start/End: Original strand, 2826922 - 2827283
Alignment:
| Q |
26 |
caatatcatgccattttaattttctgcagtcattcctattcctagctggttttgccgccttaggagttctaacatcttgtttgagatttctcaccaaagt |
125 |
Q |
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| T |
2826922 |
caatatcatgccatttttattttttgcagtcattccta------gccggtttagccgcctcaggagttctaacatcttgtttgagatttctcaccaaagt |
2827015 |
T |
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| Q |
126 |
ggcttttgagaaatcggatgacggacttcgacaaggggaatgtatgttacccttttgcactagcgaacatataaatcaaaataagttttactcacaaaaa |
225 |
Q |
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|| ||||||||||||||| |||||||||||| ||||| ||||||| |||||||||||||| |||||||||||||||||||| ||||||| ||||||||| |
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| T |
2827016 |
ggtttttgagaaatcggaggacggacttcgaagaggggcatgtatgctacccttttgcacttgcgaacatataaatcaaaatcagttttagtcacaaaaa |
2827115 |
T |
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| Q |
226 |
tttattttccattctaaaagttatat-ctgcatatatgatagacttaatagttagtatttaccaataa-nnnnnnnnngcagtgctattctttggaatct |
323 |
Q |
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|||||||||||||||||||| ||| ||| |||||| |||||||||| |||| || ||||| |||||||||||||||||||| | |
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| T |
2827116 |
catattttccattctaaaagttctatgctgaatatatcatagacttaa-------tattcactaataattttttttttgcagtgctattctttggaatat |
2827208 |
T |
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| Q |
324 |
ctatcctctttgagttgttgtgcattattctctatgcaatctactttcctaagttgtccattgtagagtattatc |
398 |
Q |
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||| | |||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||| | ||||||| |
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| T |
2827209 |
ctaccttctttgagtttttgtgcattattctctatgcaatctacttccctaagttgaccattgtaaaatattatc |
2827283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 26 - 184
Target Start/End: Original strand, 2823522 - 2823674
Alignment:
| Q |
26 |
caatatcatgccattttaattttctgcagtcattcctattcctagctggttttgccgccttaggagttctaacatcttgtttgagatttctcaccaaagt |
125 |
Q |
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||||||||||||||||| ||||||||||||||||| ||||||||||| | ||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
2823522 |
caatatcatgccatttttattttctgcagtcattc------ctagctggtttagtcgcctcaggagttctaacgtcttgtttgagatttctcaccaaagt |
2823615 |
T |
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| Q |
126 |
ggcttttgagaaatcggatgacggacttcgacaaggggaatgtatgttacccttttgca |
184 |
Q |
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| T |
2823616 |
ggcttttgaggaatcggatgacggacttcgaaaagaggcatgtatgttacccttttgca |
2823674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 302 - 397
Target Start/End: Original strand, 2820017 - 2820112
Alignment:
| Q |
302 |
gcagtgctattctttggaatctctatcctctttgagttgttgtgcattattctctatgcaatctactttcctaagttgtccattgtagagtattat |
397 |
Q |
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| T |
2820017 |
gcagtgctattctttggaatctctatcttctttgagttgttgtgcattattctctatgcaatctactttcctaagttgtccattgtagagtattat |
2820112 |
T |
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