View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19136_low_1 (Length: 571)

Name: NF19136_low_1
Description: NF19136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19136_low_1
NF19136_low_1
[»] chr1 (7 HSPs)
chr1 (17-561)||(9873646-9874190)
chr1 (127-190)||(21322575-21322638)
chr1 (139-190)||(32827723-32827774)
chr1 (127-179)||(622948-623000)
chr1 (127-194)||(52186918-52186985)
chr1 (127-171)||(3851722-3851766)
chr1 (130-182)||(29855934-29855986)
[»] chr6 (4 HSPs)
chr6 (127-190)||(2725850-2725913)
chr6 (127-179)||(23252896-23252948)
chr6 (127-181)||(33699307-33699361)
chr6 (127-183)||(2744118-2744173)
[»] chr8 (10 HSPs)
chr8 (128-190)||(38006564-38006626)
chr8 (127-181)||(22842156-22842210)
chr8 (127-183)||(12750161-12750217)
chr8 (127-183)||(33102111-33102167)
chr8 (408-465)||(235040-235097)
chr8 (408-465)||(711451-711508)
chr8 (408-465)||(872558-872615)
chr8 (408-463)||(748665-748720)
chr8 (408-463)||(804900-804955)
chr8 (142-190)||(8983689-8983737)
[»] chr4 (8 HSPs)
chr4 (127-177)||(52450179-52450229)
chr4 (128-190)||(24393608-24393670)
chr4 (408-465)||(51170299-51170356)
chr4 (127-190)||(33648198-33648261)
chr4 (127-181)||(53979022-53979076)
chr4 (141-182)||(21027922-21027963)
chr4 (152-184)||(29525708-29525740)
chr4 (127-179)||(36138944-36138995)
[»] chr3 (3 HSPs)
chr3 (127-192)||(35310436-35310501)
chr3 (127-183)||(20991558-20991614)
chr3 (405-475)||(17264212-17264282)
[»] chr7 (5 HSPs)
chr7 (125-183)||(21455303-21455360)
chr7 (127-183)||(3756381-3756437)
chr7 (144-183)||(9902185-9902224)
chr7 (128-186)||(10084615-10084672)
chr7 (127-179)||(33818960-33819012)
[»] chr2 (4 HSPs)
chr2 (127-193)||(6619999-6620065)
chr2 (127-183)||(33833457-33833512)
chr2 (143-183)||(44540666-44540706)
chr2 (127-179)||(13387327-13387379)
[»] chr5 (3 HSPs)
chr5 (127-183)||(37442614-37442669)
chr5 (127-198)||(9979681-9979752)
chr5 (127-183)||(34594662-34594717)


Alignment Details
Target: chr1 (Bit Score: 525; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 17 - 561
Target Start/End: Original strand, 9873646 - 9874190
Alignment:
Q  17 aaatacaaagcaaagtacaaaagtccagtatataaggggacaaaccttgataccaaaaacagatgtgtaccttaataccaaaatacaaagcaaagtacaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9873646 aaatacaaagcaaagtacaaaagtccagtatataaggggacaaaccttgataccaaaaacagatgtgtaccttaataccaaaatacaaagcaaagtacaa 9873745  T
Q  117 aagcacacttgttaactcacgttcggctattttgacgggaataagtaaaaacagatgggagaagagcggtactccataagcaattaccacctaccaacta 216  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  9873746 aagcacacctgttaacttacgttcggctattttgacgggaataagtaaaaacagatgggagaagagcggtactccagaagcaattaccgcctaccaacta 9873845  T
Q  217 acaaaatcccacaaagtcaccgctggccctatggtaacaggcagcagcaaatgccccatgatagcgccaaaacagcccccacagcaaggtacgaccagca 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9873846 acaaaatcccacaaagtcaccgctggccctatggtaacaggcagcagcaaatgccccatgatagcgccaaaacagcccccacagcaaggtacgaccagca 9873945  T
Q  317 ttgaaaataagcaccaaaatcgaaacagcagctatagccctccacctccttaagaacgaaattacctcgtgagtcaatcccttcttatcaattttcattc 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9873946 ttgaaaataagcaccaaaatcgaaacagcagctatagccctccacctccttaagaacgaaattacctcgtgagtcaatcccttcttatcaattttcattc 9874045  T
Q  417 tactcaaacttcaataccaagacatcaccttaatttgatccaccatattatcaatctcccaaagcttgttgaaaatccactcatttcttgttttctaaat 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9874046 tactcaaacttcaataccaagacatcaccttaatttgatccaccatattatcaatctcccaaagcttgttgaaaatccactcatttcttgttttctaaat 9874145  T
Q  517 aacccaaattgttacattccaaattagccaaaattcacgcctttg 561  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  9874146 aacccaaattgttacatgccaaattagccaaaattcacgcctttg 9874190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 21322575 - 21322638
Alignment:
Q  127 gttaactcacgttcggctattttgacgggaataagtaaaaacagatgggagaagagcggtactc 190  Q
    ||||||||||  |||||||||||||||||| | || ||||||||||||||||||||| ||||||    
T  21322575 gttaactcaccctcggctattttgacgggattgagcaaaaacagatgggagaagagcagtactc 21322638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 32827774 - 32827723
Alignment:
Q  139 tcggctattttgacgggaataagtaaaaacagatgggagaagagcggtactc 190  Q
    |||||||||||||| ||||| || ||||||||||||||||||||| ||||||    
T  32827774 tcggctattttgacaggaatgagcaaaaacagatgggagaagagcagtactc 32827723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 622948 - 623000
Alignment:
Q  127 gttaactcacgttcggctattttgacgggaataagtaaaaacagatgggagaa 179  Q
    ||||||||| | || |||||||||||||| ||||| |||||||||||||||||    
T  622948 gttaactcaggctcagctattttgacggggataagcaaaaacagatgggagaa 623000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 52186918 - 52186985
Alignment:
Q  127 gttaactcacgttcggctattttgacgggaataagtaaaaacagatgggagaagagcggtactccata 194  Q
    ||||||||||| ||||||||||||| || | | || |||||||||| ||| |||||||||| ||||||    
T  52186918 gttaactcacgctcggctattttgatggaagtgagcaaaaacagataggaaaagagcggtattccata 52186985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 3851766 - 3851722
Alignment:
Q  127 gttaactcacgttcggctattttgacgggaataagtaaaaacaga 171  Q
    ||||||||||| ||||||||||||||||| || || |||||||||    
T  3851766 gttaactcacgctcggctattttgacggggatgaggaaaaacaga 3851722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 29855986 - 29855934
Alignment:
Q  130 aactcacgttcggctattttgacgggaataagtaaaaacagatgggagaagag 182  Q
    |||||||| ||| ||||||||| |||||| || ||||||||||||| ||||||    
T  29855986 aactcacgctcgactattttgatgggaatgagcaaaaacagatgggggaagag 29855934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 2725850 - 2725913
Alignment:
Q  127 gttaactcacgttcggctattttgacgggaataagtaaaaacagatgggagaagagcggtactc 190  Q
    ||||||||||| |||||||||||||||||||| || ||||||||||||||||||||| ||||||    
T  2725850 gttaactcacgctcggctattttgacgggaatgagcaaaaacagatgggagaagagcagtactc 2725913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 23252896 - 23252948
Alignment:
Q  127 gttaactcacgttcggctattttgacgggaataagtaaaaacagatgggagaa 179  Q
    ||||||||||| |||||||||||||||||||| || |||| ||||||||||||    
T  23252896 gttaactcacgctcggctattttgacgggaatgagcaaaaccagatgggagaa 23252948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 33699361 - 33699307
Alignment:
Q  127 gttaactcacgttcggctattttgacgggaataagtaaaaacagatgggagaaga 181  Q
    ||||||||||| ||  ||||||||||||||| ||| |||||||||| ||||||||    
T  33699361 gttaactcacgctcacctattttgacgggaacaagcaaaaacagattggagaaga 33699307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 2744173 - 2744118
Alignment:
Q  127 gttaactcacgttcggctattttgacgggaataagtaaaaacagatgggagaagagc 183  Q
    |||||||||||||| | ||||||||||||||  || |||||||||| ||||||||||    
T  2744173 gttaactcacgttctgttattttgacgggaacgagcaaaaacagat-ggagaagagc 2744118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 38006564 - 38006626
Alignment:
Q  128 ttaactcacgttcggctattttgacgggaataagtaaaaacagatgggagaagagcggtactc 190  Q
    |||||||||| ||| ||||||| |||||||| || ||||||||||||||||||||||||||||    
T  38006564 ttaactcacgctcgactattttaacgggaatgagcaaaaacagatgggagaagagcggtactc 38006626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 22842210 - 22842156
Alignment:
Q  127 gttaactcacgttcggctattttgacgggaataagtaaaaacagatgggagaaga 181  Q
    ||||||||||| ||| |||||||||||||||| || |||||||||||||||||||    
T  22842210 gttaactcacgctcgactattttgacgggaatgagaaaaaacagatgggagaaga 22842156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 12750217 - 12750161
Alignment:
Q  127 gttaactcacgttcggctattttgacgggaataagtaaaaacagatgggagaagagc 183  Q
    ||||||||||| |||||||||| |||||| || || |||||||||||||||||||||    
T  12750217 gttaactcacgctcggctatttggacggggatgaggaaaaacagatgggagaagagc 12750161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 33102111 - 33102167
Alignment:
Q  127 gttaactcacgttcggctattttgacgggaataagtaaaaacagatgggagaagagc 183  Q
    ||||||||||| |||||||||||||||||||| || ||||||||||  |||||||||    
T  33102111 gttaactcacgctcggctattttgacgggaatgagcaaaaacagataagagaagagc 33102167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 408 - 465
Target Start/End: Complemental strand, 235097 - 235040
Alignment:
Q  408 ttttcattctactcaaacttcaataccaagacatcaccttaatttgatccaccatatt 465  Q
    |||||||| ||| |||||| |||||||||||||||||||| ||||| || ||||||||    
T  235097 ttttcattatacgcaaactccaataccaagacatcaccttgatttggtctaccatatt 235040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 408 - 465
Target Start/End: Complemental strand, 711508 - 711451
Alignment:
Q  408 ttttcattctactcaaacttcaataccaagacatcaccttaatttgatccaccatatt 465  Q
    |||||||| ||| |||||| |||||||||||||||||||| ||||| || ||||||||    
T  711508 ttttcattatacgcaaactccaataccaagacatcaccttgatttggtctaccatatt 711451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 408 - 465
Target Start/End: Complemental strand, 872615 - 872558
Alignment:
Q  408 ttttcattctactcaaacttcaataccaagacatcaccttaatttgatccaccatatt 465  Q
    |||||||| ||| |||||| |||||||||||||||||||| ||||| || ||||||||    
T  872615 ttttcattatacgcaaactccaataccaagacatcaccttgatttggtctaccatatt 872558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 463
Target Start/End: Complemental strand, 748720 - 748665
Alignment:
Q  408 ttttcattctactcaaacttcaataccaagacatcaccttaatttgatccaccata 463  Q
    |||||||| ||| |||||| |||||||||||||||||||| ||||| || ||||||    
T  748720 ttttcattatacgcaaactccaataccaagacatcaccttgatttggtctaccata 748665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 463
Target Start/End: Complemental strand, 804955 - 804900
Alignment:
Q  408 ttttcattctactcaaacttcaataccaagacatcaccttaatttgatccaccata 463  Q
    |||||||| ||| |||||| |||||||||||||||||||| ||||| || ||||||    
T  804955 ttttcattatacgcaaactccaataccaagacatcaccttgatttggtctaccata 804900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 8983737 - 8983689
Alignment:
Q  142 gctattttgacgggaataagtaaaaacagatgggagaagagcggtactc 190  Q
    ||||||||||| |||| | | ||||||||||||||||||||| ||||||    
T  8983737 gctattttgacaggaacaggcaaaaacagatgggagaagagcagtactc 8983689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 127 - 177
Target Start/End: Original strand, 52450179 - 52450229
Alignment:
Q  127 gttaactcacgttcggctattttgacgggaataagtaaaaacagatgggag 177  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  52450179 gttaactcacgctcggctattttgacgggaatgagtaaaaacagatgggag 52450229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 24393670 - 24393608
Alignment:
Q  128 ttaactcacgttcggctattttgacgggaataagtaaaaacagatgggagaagagcggtactc 190  Q
    |||||||||| ||  ||||||||| |||||| || ||||||||||||||||||||||||||||    
T  24393670 ttaactcacgctcaactattttgatgggaatgagcaaaaacagatgggagaagagcggtactc 24393608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 408 - 465
Target Start/End: Original strand, 51170299 - 51170356
Alignment:
Q  408 ttttcattctactcaaacttcaataccaagacatcaccttaatttgatccaccatatt 465  Q
    ||||||||| || |||||| |||||||||||||||||||| ||||| |||||||||||    
T  51170299 ttttcattcaacgcaaactccaataccaagacatcaccttgatttggtccaccatatt 51170356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 33648261 - 33648198
Alignment:
Q  127 gttaactcacgttcggctattttgacgggaataagtaaaaacagatgggagaagagcggtactc 190  Q
    ||||||||||  ||| |||||||||||||||| || ||||| | ||||||||||| ||||||||    
T  33648261 gttaactcacactcgactattttgacgggaatgagcaaaaatatatgggagaagaacggtactc 33648198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 53979076 - 53979022
Alignment:
Q  127 gttaactcacgttcggctattttgacgggaataagtaaaaacagatgggagaaga 181  Q
    ||||||||||||||| ||||||| || ||||| || ||||||||||||| |||||    
T  53979076 gttaactcacgttcgactattttaacaggaatgagcaaaaacagatgggggaaga 53979022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 21027922 - 21027963
Alignment:
Q  141 ggctattttgacgggaataagtaaaaacagatgggagaagag 182  Q
    |||||||||||| ||||| || ||||||||||||||||||||    
T  21027922 ggctattttgacaggaatgagcaaaaacagatgggagaagag 21027963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 152 - 184
Target Start/End: Original strand, 29525708 - 29525740
Alignment:
Q  152 cgggaataagtaaaaacagatgggagaagagcg 184  Q
    |||||||||||||||||| ||||||||||||||    
T  29525708 cgggaataagtaaaaacaaatgggagaagagcg 29525740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 36138995 - 36138944
Alignment:
Q  127 gttaactcacgttcggctattttgacgggaataagtaaaaacagatgggagaa 179  Q
    |||||||||||||||  |||||||||| |||| || |||||||||||||||||    
T  36138995 gttaactcacgttcgcttattttgacgagaatgag-aaaaacagatgggagaa 36138944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 35310436 - 35310501
Alignment:
Q  127 gttaactcacgttcggctattttgacgggaataagtaaaaacagatgggagaagagcggtactcca 192  Q
    ||||||||||| ||||||||||||||||| || || ||||| |||||||||| |||||||||||||    
T  35310436 gttaactcacgctcggctattttgacggggatgagcaaaaatagatgggagatgagcggtactcca 35310501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 20991614 - 20991558
Alignment:
Q  127 gttaactcacgttcggctattttgacgggaataagtaaaaacagatgggagaagagc 183  Q
    ||||||||||| |||||||||||||||||||| || ||||  |||||||||||||||    
T  20991614 gttaactcacgctcggctattttgacgggaatgagcaaaattagatgggagaagagc 20991558  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 475
Target Start/End: Original strand, 17264212 - 17264282
Alignment:
Q  405 caattttcattctactcaaacttcaataccaagacatcaccttaatttgatccaccatattatcaatctcc 475  Q
    |||||||| ||||||||||||| |||||| | |||||  |||||| ||| |||||||||||||| ||||||    
T  17264212 caattttctttctactcaaactccaatactaggacattgccttaacttgttccaccatattatccatctcc 17264282  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 21455360 - 21455303
Alignment:
Q  125 ttgttaactcacgttcggctattttgacgggaataagtaaaaacagatgggagaagagc 183  Q
    ||||||||||||  ||| |||||||||||| |||||||||||||| |||||||||||||    
T  21455360 ttgttaactcacactcgactattttgacggaaataagtaaaaaca-atgggagaagagc 21455303  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 3756437 - 3756381
Alignment:
Q  127 gttaactcacgttcggctattttgacgggaataagtaaaaacagatgggagaagagc 183  Q
    ||||||||||  ||| |||||||||||||||| || ||||||| |||||||||||||    
T  3756437 gttaactcacactcgactattttgacgggaatgagcaaaaacaaatgggagaagagc 3756381  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 183
Target Start/End: Original strand, 9902185 - 9902224
Alignment:
Q  144 tattttgacgggaataagtaaaaacagatgggagaagagc 183  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  9902185 tattttgacgggaatgagcaaaaacagatgggagaagagc 9902224  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 10084672 - 10084615
Alignment:
Q  128 ttaactcacgttcggctattttgacgggaataagtaaaaacagatgggagaagagcggt 186  Q
    |||||||||| | |||||||| ||||||||| || ||||||||||| ||||||||||||    
T  10084672 ttaactcacgcttggctattt-gacgggaatgagcaaaaacagatgagagaagagcggt 10084615  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 33818960 - 33819012
Alignment:
Q  127 gttaactcacgttcggctattttgacgggaataagtaaaaacagatgggagaa 179  Q
    ||||||||||||||| ||| ||||||||| || || |||||||||||| ||||    
T  33818960 gttaactcacgttcgcctactttgacggggatgagcaaaaacagatggaagaa 33819012  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 6620065 - 6619999
Alignment:
Q  127 gttaactcacgttcggctattttgacgggaataagtaaaaacagatgggagaagagcggtactccat 193  Q
    ||||||||||| ||  |||||||||||||||| || ||||||| ||| ||||||||| |||||||||    
T  6620065 gttaactcacgctcaactattttgacgggaatgagcaaaaacaaatgagagaagagcagtactccat 6619999  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 33833457 - 33833512
Alignment:
Q  127 gttaactcacgttcggctattttgacgggaataagtaaaaacagatgggagaagagc 183  Q
    |||||| |||| |||||||||| ||| ||||| ||||||||||||||||||||||||    
T  33833457 gttaacccacgctcggctattt-gacaggaatgagtaaaaacagatgggagaagagc 33833512  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 44540706 - 44540666
Alignment:
Q  143 ctattttgacgggaataagtaaaaacagatgggagaagagc 183  Q
    ||||||||||||||||||| ||||||||||| |||||||||    
T  44540706 ctattttgacgggaataagcaaaaacagatgagagaagagc 44540666  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 13387379 - 13387327
Alignment:
Q  127 gttaactcacgttcggctattttgacgggaataagtaaaaacagatgggagaa 179  Q
    ||||||||||| | | |||||||||||||||| |  |||||||||||||||||    
T  13387379 gttaactcacgcttgactattttgacgggaatgaagaaaaacagatgggagaa 13387327  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 37442614 - 37442669
Alignment:
Q  127 gttaactcacgttcggctattttgacgggaataagtaaaaacagatgggagaagagc 183  Q
    ||||||||||| |||||||||| ||||||||| || |||||||||||| ||||||||    
T  37442614 gttaactcacgctcggctattt-gacgggaatgagcaaaaacagatggaagaagagc 37442669  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 9979681 - 9979752
Alignment:
Q  127 gttaactcacgttcggctattttgacgggaataagtaaaaacagatgggagaagagcggtactccataagca 198  Q
    ||||||||||| ||| ||||||||||  |||| |  ||||||||||||||||||| | |||||| |||||||    
T  9979681 gttaactcacgctcgactattttgacatgaatgaacaaaaacagatgggagaagaacagtactcaataagca 9979752  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 34594717 - 34594662
Alignment:
Q  127 gttaactcacgttcggctattttgacgggaataagtaaaaacagatgggagaagagc 183  Q
    ||||||||||| ||||||||||  |||||||| || ||||| |||||||||||||||    
T  34594717 gttaactcacgctcggctattta-acgggaatgagaaaaaaaagatgggagaagagc 34594662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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