View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19136_low_10 (Length: 227)
Name: NF19136_low_10
Description: NF19136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19136_low_10 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 423056 - 423282
Alignment:
| Q |
1 |
catttgcaagaaaggaacccaatttgtcttccctttctttcttcttaatcttcttccccttgatgtcatatccaatatggggttcatcctcataccactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
423056 |
catttgcaagaaaggaacccaatttgtcttccctttctttcttcttaatcttcttccccttgatgtcatatccaatatggggttcatcctcataccactt |
423155 |
T |
|
| Q |
101 |
caaagggacctctccaatggtattccgaggagccacctacggaaaaaggaaacgcagagcaatcaaattcaagtccatagtaatataaaagggaattgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
423156 |
caaagggacctctccaatggtattccgaggagccacctacggaaaaaggaaacgcagagcaatcaaattcaagtccatagtaatataaatgggaattgat |
423255 |
T |
|
| Q |
201 |
tacaacaaataattataatgatgatga |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
423256 |
tacaacaaataattataatgatgatga |
423282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University