View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19136_low_7 (Length: 309)
Name: NF19136_low_7
Description: NF19136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19136_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 131 - 294
Target Start/End: Original strand, 21817430 - 21817592
Alignment:
| Q |
131 |
gcatttctatcttttgtaaagtggctttaatgtgtaacggattgattttaatttccaatggattgagttggcatatatagaagaacatttttccacttta |
230 |
Q |
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| T |
21817430 |
gcatttctatcttttgtaaagtggctttaatgtgtaacggattgattttaatttccaatggattgagttggcatatatagaagaacatttttccacttta |
21817529 |
T |
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| Q |
231 |
ctaaacagtattgnnnnnnnnncattcttgttagtattttcacgtgtttttccacagaaaaagt |
294 |
Q |
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| T |
21817530 |
ctaaacagtattg-aaaaaaaacattcttgttagtattttcacgtgtttttccacagaaaaagt |
21817592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 21815111 - 21815234
Alignment:
| Q |
16 |
atgggggattatcgtatttttgtgctatttattatatttcaaaagttataattatcatgttttatttcatactatgttaattatgatttacttggtcaat |
115 |
Q |
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| T |
21815111 |
atgggggattgtcgtatttttgtgctatttattatatttcaaaagttataattatcatgttttatttcatactatgttaattatgatttacttggtcaat |
21815210 |
T |
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| Q |
116 |
gcctcactaaaacgtgcatttcta |
139 |
Q |
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| T |
21815211 |
gcctcactaaaacgtgcatttcta |
21815234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 47203749 - 47203809
Alignment:
| Q |
30 |
tatttttgtgctatttattatatttcaaaagttataattatcatgttttatttcatactat |
90 |
Q |
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| T |
47203749 |
tatttttatactatttattatatttcaaaagctataattttcatgttttatttcatactat |
47203809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 16463651 - 16463774
Alignment:
| Q |
16 |
atgggggattatcgtatttttgtgctatttattatatttcaaaagttataattatcatgttttatttcatactatgttaattatgatttacttggtcaat |
115 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16463651 |
atgggggattgtcgtatttttgtgctatttattatatttcaaaagttataattatcatgttttatttcatactatgttaattatgatttacttggtcaat |
16463750 |
T |
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| Q |
116 |
gcctcactaaaacgtgcatttcta |
139 |
Q |
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| T |
16463751 |
gcctcactaaaacgtgcatttcta |
16463774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 30 - 229
Target Start/End: Original strand, 18336733 - 18336944
Alignment:
| Q |
30 |
tatttttgtgctatttattatatttcaaaagttataattatcatgttttatttcatact-----------atgttaattatgatttacttggtcaatgcc |
118 |
Q |
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| T |
18336733 |
tatttttatactatttattatatttcaaaagttatagttatcatgttttatttcatgctgatatgaatacattttaattatggtttacttgatcaaatac |
18336832 |
T |
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| Q |
119 |
tcactaaaacgtgcatttctatc--ttttgtaaagtggctttaatgtgtaacggattgattttaatttccaatggattgagttggcatatatagaagaac |
216 |
Q |
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| T |
18336833 |
tctctataacgtgcatttccttcaatcttgtaaagtggctttaatgtgtaactgattgattttaatttgcaacggattga-ttggcatatatagaaaaac |
18336931 |
T |
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| Q |
217 |
atttttccacttt |
229 |
Q |
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| T |
18336932 |
atttttccacttt |
18336944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 26969467 - 26969396
Alignment:
| Q |
17 |
tgggggattatcgtatttttgtgctatttattatatttcaaaagttataattatcatgttttatttcatact |
88 |
Q |
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| T |
26969467 |
tgggggattgttatatttttatactatttattatatttcaaaagctataattttcatgctttatttcatact |
26969396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 26973949 - 26973891
Alignment:
| Q |
30 |
tatttttgtgctatttattatatttcaaaagttataattatcatgttttatttcatact |
88 |
Q |
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| T |
26973949 |
tatttttatactatttattatatttcaaaagctataattttcatgctttatttcatact |
26973891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 7505618 - 7505560
Alignment:
| Q |
30 |
tatttttgtgctatttattatatttcaaaagttataattatcatgttttatttcatact |
88 |
Q |
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| T |
7505618 |
tatttttatactatttattatattttaaaagctataaatttcatgctttatttcatact |
7505560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 14058563 - 14058621
Alignment:
| Q |
30 |
tatttttgtgctatttattatatttcaaaagttataattatcatgttttatttcatact |
88 |
Q |
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||||||| | ||||||||||||||||||||| ||||||| ||||| ||||||||||||| |
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| T |
14058563 |
tatttttatactatttattatatttcaaaagctataattttcatgctttatttcatact |
14058621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 14923016 - 14923073
Alignment:
| Q |
29 |
gtatttttgtgctatttattatatttcaaaagttataattatcatgttttatttcata |
86 |
Q |
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| T |
14923016 |
gtatttttatactatttgttatatttcaaaagttataattttcatactttgtttcata |
14923073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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