View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19136_low_8 (Length: 271)
Name: NF19136_low_8
Description: NF19136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19136_low_8 |
 | |
|
| [»] scaffold0891 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0891 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 4418 - 4165
Alignment:
| Q |
18 |
gttggaagataattttagaaatatatgtttccaagattttcaagacatatgtacatttgatcattatgataactatttatttctatcaatcgtataatga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4418 |
gttggaagataattttagaaatatatgtttccaagattttcaagacatatgtacatttgatcattatgataactatttatttctatcaatcgtataatga |
4319 |
T |
|
| Q |
118 |
ttaattaagtgttttttccccataaaatattgcatatagtcaatcataagaacttacaataataaaaccataaatatgaagtggaaatagtttagctaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4318 |
ttaattaagtgttttttccccataaaatattgcatatagtcaatcataagaacttaaaataataaaaccataaatatgaagtggaaatagtttagctaaa |
4219 |
T |
|
| Q |
218 |
agtaatagaacagaaatgttgcatctcaacaaaatacatagaccatactaaact |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4218 |
agtaatagaacagaaatgttgcatctcaacaaaatacatagaccatactaaact |
4165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 136 - 264
Target Start/End: Original strand, 35774168 - 35774298
Alignment:
| Q |
136 |
cccataaaatattgcatatagtcaatcataagaacttacaataataaaaccataaatatgaagtggaaatagtttagctaaaagtaatagaacagaa--- |
232 |
Q |
| |
|
|||| |||||||||| |||||| ||| |||||||| ||| |||||| ||| || | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35774168 |
cccagaaaatattgcttatagttaatattaagaactaacattaataagacctta----ttaagtggaaatagtttagctaaaagtaatagaacagaaatg |
35774263 |
T |
|
| Q |
233 |
---atgttgcatctcaacaaaatacatagaccata |
264 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| |
|
|
| T |
35774264 |
tcgatgtcgcatctcaacaaaatatatagaccata |
35774298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University