View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19138_low_1 (Length: 429)
Name: NF19138_low_1
Description: NF19138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19138_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 45565679 - 45566096
Alignment:
| Q |
1 |
ctttgatctgttagagaattcgcaaaccccacattctcatccattcgcccaacatcatctctttgcacgcagaattcataaaataggagctagcaaccac |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45565679 |
ctttgatctgttacagaattcgcaaaccccacattctcatccattcaccgaacatcatctctttgcacgcagaattcataaaataggagctagcaaccac |
45565778 |
T |
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| Q |
101 |
gtaaagttcatgttgcgccacaaccaaagtcctatcatctttcttcaagtttgtaaaagtattgcatcatctctttgcactcgccatggcttgaaagaat |
200 |
Q |
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| T |
45565779 |
gtaaagttcatgttgcgccacaaccaaagtcctatcatctttcttcaagtttgtaaaagtattgcatcatctctttgcactcgccatggcttgaaagaat |
45565878 |
T |
|
| Q |
201 |
cgcgcattggtgtcaccatccttaagccaaatcacctttgctatttgtttccaaaatgcttctgcttgtgccaataatcctcccattcaaatatgtacct |
300 |
Q |
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| T |
45565879 |
cgcgcattggtatcaccatccttaagccaaatcacctttgctatttgtttccaaaatgcttctgcttgtgccaataatcctctcattcaaatatgtacct |
45565978 |
T |
|
| Q |
301 |
ccttagagcgcccaatttgggaagcttgcacgctgcccctaaatctatctaactcatcccgacattcatcaatggaaacttgatacttactttggagctt |
400 |
Q |
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| T |
45565979 |
ccttagagcgcgcaatttgggaagcttgcacgctgcccctaaatctctctaactcatcccgacattcatcaatggaaactcgatacttactttggagctt |
45566078 |
T |
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| Q |
401 |
tcttcccggttcgttcat |
418 |
Q |
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| T |
45566079 |
tcttccccgttcgttcat |
45566096 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 213 - 274
Target Start/End: Original strand, 8179388 - 8179449
Alignment:
| Q |
213 |
tcaccatccttaagccaaatcacctttgctatttgtttccaaaatgcttctgcttgtgccaa |
274 |
Q |
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||||||||||| |||||||||||||| ||| |||| |||||||| |||||| |||||||||| |
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| T |
8179388 |
tcaccatccttcagccaaatcaccttagctctttgcttccaaaacgcttcttcttgtgccaa |
8179449 |
T |
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