View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19138_low_2 (Length: 297)
Name: NF19138_low_2
Description: NF19138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19138_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 28800118 - 28799836
Alignment:
| Q |
1 |
tccaccacaacgaggcaagtcaatgccttaccaccccattgggatccttcaaatcacccaacccttcaccttatttatcttcaagcaccctcttccacaa |
100 |
Q |
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||||||||||||||||||| | ||||||||||||||||||||| ||| | |||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
28800118 |
tccaccacaacgaggcaagacgatgccttaccaccccattgggctccctaaaatcacccaaccctttaccgtatttatcttcaagcaccctcttccacaa |
28800019 |
T |
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| Q |
101 |
ggagccatcttccttaaaaatcttccatttccactttgttaaaaggctaagattcaccaacttcacatctgtcacccccaaaccaccctttttcttcggt |
200 |
Q |
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||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
28800018 |
ggaaccatcttccttaaaaagcttccatttccactttgttaaaaggctaagattcaccaacttcacatttgtcacccccataccaccctttttcttcggt |
28799919 |
T |
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| Q |
201 |
tgataaaccctcctccaattcacccaacacaatctcctatgatctcctctac-ccccaaagaaaatttctttggagagccacc |
282 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28799918 |
tgataacccctcctccaattcacccaacacaatctcctatgatctcctctaccccccaaagaaaatttctttggagagccacc |
28799836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 72 - 184
Target Start/End: Original strand, 23294078 - 23294190
Alignment:
| Q |
72 |
tatttatcttcaagcaccctcttccacaaggagccatcttccttaaaaatcttccatttccactttgttaaaaggctaagattcaccaacttcacatctg |
171 |
Q |
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||||||||||||||||||||||||||||| || ||||| ||||| || |||||| ||||| |||| | |||||||||||||| ||||||||||||| |
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| T |
23294078 |
tatttatcttcaagcaccctcttccacaaagaaccatcacccttatgaagcttccacttccattttgcaagaaggctaagattcatcaacttcacatctc |
23294177 |
T |
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| Q |
172 |
tcacccccaaacc |
184 |
Q |
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| T |
23294178 |
taactcccaaacc |
23294190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 32775181 - 32775225
Alignment:
| Q |
125 |
ccatttccactttgttaaaaggctaagattcaccaacttcacatc |
169 |
Q |
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|||||||||||||| |||||||| | |||||||||||||||||| |
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| T |
32775181 |
ccatttccactttgccaaaaggctcaaattcaccaacttcacatc |
32775225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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