View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19139_high_11 (Length: 409)
Name: NF19139_high_11
Description: NF19139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19139_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 8 - 393
Target Start/End: Original strand, 36695477 - 36695870
Alignment:
| Q |
8 |
ccaagaatattgctaaacctctatttaaaccttttccaagtgttgctcctgcatatgccacataatcaaattaattaaccaccagttaaaattcatgtcc |
107 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36695477 |
ccaaaaatgttgctaaacctctatttaaaccttttccaagtgttgctcctgcatatgccacataatcaaattaattaaccaccagttaaaattcatgtcc |
36695576 |
T |
|
| Q |
108 |
acattatatgtacttgtttgatgctaaattcatgtaataagcaagagctaacatgcatttttgaagtttggattgcatgtagtcatcaattacacaaatt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
36695577 |
acattatatgtacttgtttgatgctaaattcatgtaataagcaagagctaacatgcatttttgaagtttggattgcatgtattcatcgattacacaaatt |
36695676 |
T |
|
| Q |
208 |
ctcacacattcaacatattaaaggtcgtttgatcgagatcgtaccatcc--------nnnnnnnnnatatatataatatttgaacagttcagtcttgatc |
299 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
36695677 |
ctcacacattcaacatattaaaggtcgttagatcgagatcgtaccatcctttttttttttttatatatatatataatatttgaacagttcagtcttaatc |
36695776 |
T |
|
| Q |
300 |
caacaagtggtaaaataatatgcaatatgacggaccgaacttaagactagagaaaaacttaatagacactaaacttaaatggaaatatggaatg |
393 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36695777 |
caacaagtggcaaaataatatgcaatatgacggaccgaacttaagactagagaaaaacttaatagacactaaacttaaatggaaatatggaatg |
36695870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University