View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19139_high_15 (Length: 350)
Name: NF19139_high_15
Description: NF19139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19139_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 5 - 335
Target Start/End: Complemental strand, 36565963 - 36565630
Alignment:
| Q |
5 |
gtatgcattcaatttgaa-cttcggtttatcatcaaagacgtgtttggctgtgaattggaatttcaggttttccatggtttttatcagcaacccacacta |
103 |
Q |
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| T |
36565963 |
gtatgcattcaatttgaaacttcggtttatcatcaaagacgtgtttggctgtgaattggaatttcaggttttccatggttgttatcaacaacccacacta |
36565864 |
T |
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| Q |
104 |
tttaatcatttaactgaggtagctaataatatcataggtaccattgtatgcaatggttacaaatgttagtttttgcggtgctttggttcactgcaaaatg |
203 |
Q |
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| T |
36565863 |
tttaatcatttaactgaggtagctaataatatcataggtaccattgtatgcaatggttacaaatgttagtttttgcggtgctttggttcactgcaaaatg |
36565764 |
T |
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| Q |
204 |
nnnnnnnnaggattcatagcaaaattatagaacgagattaccttaaatggatgggttttactcttaactttatttatgaatgtcagtttatatatacaaa |
303 |
Q |
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| T |
36565763 |
ttttttttaggattcatagcaaaattatagaacgagattaccttaaatggatgggttttactcttaactttatttatgaatgtcagtttatatatacaaa |
36565664 |
T |
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| Q |
304 |
ta--tttggttagtattttattagctgtccaatt |
335 |
Q |
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| T |
36565663 |
tatttttggttagtattttaatagttgtccaatt |
36565630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 12844410 - 12844479
Alignment:
| Q |
27 |
ggtttatcatcaaagacgtgtttggctgtgaattggaatttcaggttttccatggtttttatcagcaacccac |
99 |
Q |
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| T |
12844410 |
ggtttatcatcaaagacatgtttggc--tgaattggaatttc-ggcttttcattgttgttatcaacaacccac |
12844479 |
T |
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