View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19139_high_16 (Length: 350)
Name: NF19139_high_16
Description: NF19139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19139_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 36 - 332
Target Start/End: Original strand, 40662578 - 40662873
Alignment:
| Q |
36 |
ctaaatggacacacattcctaaaactaaggttaactacatactccatcaataatacggatcggaaacgggtttggtacagtttacaccgtgcaatagaat |
135 |
Q |
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| T |
40662578 |
ctaaatggacacacattcctaaaactaagggtaactacatactccatcaataatacg-atcggaaacgggtttggtacagtttacaccgtgcaatagaat |
40662676 |
T |
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| Q |
136 |
ccaagatgttgtgttgtagatattttgtgaaatttcaaggctaagagggtagcaaatcacctccaaaaggtaatggttgtataagaatatgaaatgatgc |
235 |
Q |
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| T |
40662677 |
ccaagatgttgtgctgcagatattttgtgaaatttcaaagctaagagggtagcaaatcacctccaaaaggtaatggttgtataagaatatgaaatgatgc |
40662776 |
T |
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| Q |
236 |
ttgaaactatacgaagtcgatagagcaagcccaaattccacctttccatgtttccggcggctgagatcaacatccgagtttcatctcaacaacgttg |
332 |
Q |
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| T |
40662777 |
ttgaaactatacgaagtcgatagagcaagcccaaattccacctttccatgtttccggcggctgagatcaacatccgagtttcatctcaacaacgttg |
40662873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 40662512 - 40662560
Alignment:
| Q |
2 |
tataaataattcatacataaattgagatcacaagctaaatggacacaca |
50 |
Q |
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| T |
40662512 |
tataaataattcatacataaattgagatcacaagctaaatgaacacaca |
40662560 |
T |
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