View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19139_high_17 (Length: 340)
Name: NF19139_high_17
Description: NF19139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19139_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 333
Target Start/End: Complemental strand, 34460252 - 34459929
Alignment:
| Q |
16 |
caaagcaggatatattccaacatatgatgaatacaaggttaatggattagcaagcacttcaattccaaatttaatactaacttttcttgtgtttggagaa |
115 |
Q |
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| T |
34460252 |
caaagcaggatatattccaacatatgatgaatacaaggttaatggattagcaagcacttcaattccaaatttaatactaacttttcttgtgtttggagaa |
34460153 |
T |
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| Q |
116 |
ctttcaaacgaagagttagttaattggattttaaactacccaacaatcatcgatgctgtgtcaatttttggtagactcacggacgatatatccacacata |
215 |
Q |
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| T |
34460152 |
ctttcaaacgaagagttagttaattggattttaaactacccaacaatcatcgatgctgtgtcaatttttggtagactcacggacgatatatccacaaata |
34460053 |
T |
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| Q |
216 |
aggtactacaatacaag--------tannnnnnnnacaagagtagtatttcttttttgttaagttgaactttcgtgtttaattta--aataatctatcaa |
305 |
Q |
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| T |
34460052 |
aggtactacagtacaagtatttttttattttttttacaagagtagtatttcttttttgttaagttgaactttcgtgtttaatttaataataatctatca- |
34459954 |
T |
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| Q |
306 |
aattaattaattcatttatcctttgctt |
333 |
Q |
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||||||||||||||||||||||||| |
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| T |
34459953 |
---taattaattcatttatcctttgctt |
34459929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 34448920 - 34448880
Alignment:
| Q |
22 |
aggatatattccaacatatgatgaatacaaggttaatggat |
62 |
Q |
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| T |
34448920 |
aggatatattccaacatatgatgaatacaaggctaatggat |
34448880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 222
Target Start/End: Complemental strand, 34448834 - 34448720
Alignment:
| Q |
108 |
ttggagaactttcaaacgaagagttagttaattggattttaaactacccaacaatcatcgatgctgtgtcaatttttggtagactcacggacgatatatc |
207 |
Q |
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| T |
34448834 |
ttggagaattttcaaacgacgagattctcgattggattttcaactatccaacaatcatcgatgctatatcggctcatggtagactcgcggatgacatatc |
34448735 |
T |
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| Q |
208 |
cacacataaggtact |
222 |
Q |
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| T |
34448734 |
ctcacataaggtact |
34448720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 34485506 - 34485467
Alignment:
| Q |
22 |
aggatatattccaacatatgatgaatacaaggttaatgga |
61 |
Q |
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| T |
34485506 |
aggatttattccaacatatgatgaatacaaggctaatgga |
34485467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 173
Target Start/End: Original strand, 6131288 - 6131371
Alignment:
| Q |
90 |
tactaacttttcttgtgtttggagaactttcaaacgaagagttagttaattggattttaaactacccaacaatcatcgatgctg |
173 |
Q |
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||||| ||||||||| |||||||| |||||||| |||||||| || |||||||||| | | |||||||||||||| |||||| |
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| T |
6131288 |
tactatcttttcttggtcttggagaattttcaaacaaagagttacttgattggattttcagcgacccaacaatcatcaatgctg |
6131371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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