View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19139_high_21 (Length: 258)
Name: NF19139_high_21
Description: NF19139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19139_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 10 - 254
Target Start/End: Original strand, 34418065 - 34418309
Alignment:
| Q |
10 |
catcatcaaagaacatgtatgtatacataataactgtaaaaacagacaactatctagcaatagcatcatgcaagtccagcctccaatccattgaatgtat |
109 |
Q |
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| T |
34418065 |
catcatcaaagaacatgtatgtatacataataactgtaaaaacagacaactatctagcaatagcatcatgcaagtccagcctccaatccattgaatgtat |
34418164 |
T |
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| Q |
110 |
cataaagaggcatattcagtgtctccggcagataaaatgcaaacatcccacctaaaatgccgcataccgcaaatactccgaacggcaaccaactacctaa |
209 |
Q |
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| T |
34418165 |
cataaagaggcatattcagtgtctccggcagataaaatgcaaacatcccacctaaaatgccgcataccgcaaatactccgaacggcaaccaactacctaa |
34418264 |
T |
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| Q |
210 |
aacgaccacaaaaggcgccaaaatcgcccccatttgcgcggcttg |
254 |
Q |
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| T |
34418265 |
aacgaccacaaaaggcgccaaaatcgcccccatttgcgcggcttg |
34418309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 71 - 243
Target Start/End: Original strand, 34430375 - 34430547
Alignment:
| Q |
71 |
agcatcatgcaagtccagcctccaatccattgaatgtatcataaagaggcatattcagtgtctccggcagataaaatgcaaacatcccacctaaaatgcc |
170 |
Q |
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|||||||||||||||||||| |||||| || ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| | || |
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| T |
34430375 |
agcatcatgcaagtccagccatcaatcccttaaatgtatcataaagaggcatatttagtgtctccggcagataaaacgcaaacatcccacctattaatcc |
34430474 |
T |
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| Q |
171 |
gcataccgcaaatactccgaacggcaaccaactacctaaaacgaccacaaaaggcgccaaaatcgcccccatt |
243 |
Q |
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||| |||||||||| |||||||||||||||| |||||||||||||||||||||| | | |||||||||||| |
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| T |
34430475 |
gcacgccgcaaataccccgaacggcaaccaaccacctaaaacgaccacaaaaggcacagatatcgcccccatt |
34430547 |
T |
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