View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19139_high_24 (Length: 241)
Name: NF19139_high_24
Description: NF19139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19139_high_24 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0503 (1 HSPs) |
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| [»] scaffold0034 (1 HSPs) |
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| [»] scaffold0085 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 8503530 - 8503753
Alignment:
| Q |
18 |
gaaaatcctcgcataactctaggagaccatgggaggctggataacttggatgaagtatcacttgggttctgaccagtgaaccctgtggtgtttgacatca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
8503530 |
gaaaatcctcgcataactctaggagaccatgggaggctggataacttggatgaagtatcacttgggttccgaccagcgaaccctgtggtgtttgacatca |
8503629 |
T |
|
| Q |
118 |
ataataatgtcatgcttaatttgaaatctaaccaattttcaggtaaggtatcgaaagattgcaatgttcacttggggaaataaaattcaaattcttattt |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8503630 |
ataataatgtcatgcttaatttgaaatctaaccaattttcaggtaaggtatcgaaagattgcaatgttcacttggggaaataaaattcaaattcttattt |
8503729 |
T |
|
| Q |
218 |
tttaggtcatatatgaaattactt |
241 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
8503730 |
tttaggtcatatatgaaattactt |
8503753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 165
Target Start/End: Complemental strand, 28925159 - 28925021
Alignment:
| Q |
27 |
cgcataactctaggagaccatgggaggctggataacttggatgaagtatcacttgggttctgaccagtgaaccctgtggtgtttgacatcaataataatg |
126 |
Q |
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||||| || ||| ||||| ||||||| || || ||||||||||||| |||||||| ||| ||||| ||||| ||||||||||||||||| || | || |
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| T |
28925159 |
cgcattaccctatgagactatgggagacttgacaacttggatgaaggttcacttggtttccaaccagcaaacccggtggtgtttgacatcaagaacagtg |
28925060 |
T |
|
| Q |
127 |
tcatgcttaatttgaaatctaaccaattttcaggtaagg |
165 |
Q |
| |
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| ||| | ||||||||||||||||||||||||||||||| |
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|
| T |
28925059 |
ttatgatgaatttgaaatctaaccaattttcaggtaagg |
28925021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0503 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0503
Description:
Target: scaffold0503; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 4315 - 4175
Alignment:
| Q |
18 |
gaaaatcctcgcataactctaggagaccatgggaggctggataacttggatgaagtatcacttgggttctgaccagtgaaccctgtggtgtttgacatca |
117 |
Q |
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|||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||| |||| |||||||||| |||||| |
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| T |
4315 |
gaaaattctcacataactctaggagactatgggaggctggataacttggatgaagtattacttgggttccaaccagcgaactttgtggtgtttaacatca |
4216 |
T |
|
| Q |
118 |
ataataatgtcatgcttaatttgaaatctaaccaattttca |
158 |
Q |
| |
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| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
4215 |
agaataatgtcatgcttaatttgaaatataaccaattttca |
4175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 22 - 181
Target Start/End: Original strand, 25570273 - 25570432
Alignment:
| Q |
22 |
atcctcgcataactctaggagaccatgggaggctggataacttggatgaagtatcacttgggttctgaccagtgaaccctgtggtgtttgacatcaataa |
121 |
Q |
| |
|
|||||| ||| |||||||||||| |||||||||| |||| |||||| |||||||||||||||||| || | ||||| ||||||||| |||||||| || |
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| T |
25570273 |
atcctctcattactctaggagactatgggaggctagataccttggaggaagtatcacttgggttccaactaccgaaccttgtggtgttcgacatcaagaa |
25570372 |
T |
|
| Q |
122 |
taatgtcatgcttaatttgaaatctaaccaattttcaggtaaggtatcgaaagattgcaa |
181 |
Q |
| |
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|| ||| ||||| ||||| |||| ||||||||||| |||||||| ||| ||||||||||| |
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| T |
25570373 |
tattgttatgctgaatttcaaatttaaccaatttttaggtaaggaatcaaaagattgcaa |
25570432 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 25402872 - 25402928
Alignment:
| Q |
105 |
gtgtttgacatcaataataatgtcatgcttaatttgaaatctaaccaattttcaggt |
161 |
Q |
| |
|
|||||||||||||| || | ||| ||||| |||||||||||| |||||||||||||| |
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|
| T |
25402872 |
gtgtttgacatcaagaacagtgttatgctgaatttgaaatctgaccaattttcaggt |
25402928 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0034 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0034
Description:
Target: scaffold0034; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 27 - 181
Target Start/End: Complemental strand, 76038 - 75884
Alignment:
| Q |
27 |
cgcataactctaggagaccatgggaggctggataacttggatgaagtatcacttgggttctgaccagtgaaccctgtggtgtttgacatcaataataatg |
126 |
Q |
| |
|
||||| || ||||||||| ||||||| || || ||||||||||||||||||||||| ||| ||||| ||||| ||||||||||||||||| |||| | |
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| T |
76038 |
cgcattaccctaggagactatgggagacttgaaaacttggatgaagtatcacttggtttccaaccagcaaacccggtggtgtttgacatcaagaataggg |
75939 |
T |
|
| Q |
127 |
tcatgcttaatttgaaatctaaccaattttcaggtaaggtatcgaaagattgcaa |
181 |
Q |
| |
|
||||| | |||||||||||||||| ||||||| |||||| | || |||||||||| |
|
|
| T |
75938 |
tcatgatgaatttgaaatctaacccattttcaagtaaggaaacggaagattgcaa |
75884 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 165
Target Start/End: Original strand, 1848711 - 1848840
Alignment:
| Q |
36 |
ctaggagaccatgggaggctggataacttggatgaagtatcacttgggttctgaccagtgaaccctgtggtgtttgacatcaataataatgtcatgctta |
135 |
Q |
| |
|
||||||||| ||| || ||| || ||||||||||||||||||||||| ||| ||||| ||||| || ||||||||||||| |||| ||| ||| | | |
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|
| T |
1848711 |
ctaggagactatgcgaagcttgaaaacttggatgaagtatcacttggtttccaaccagcaaacccgatgatgtttgacatcaagaatagtgttatgatga |
1848810 |
T |
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| Q |
136 |
atttgaaatctaaccaattttcaggtaagg |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
1848811 |
atttgaaatctaaccaattttcaggtaagg |
1848840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 36 - 181
Target Start/End: Complemental strand, 2563432 - 2563287
Alignment:
| Q |
36 |
ctaggagaccatgggaggctggataacttggatgaagtatcacttgggttctgaccagtgaaccctgtggtgtttgacatcaataataatgtcatgctta |
135 |
Q |
| |
|
||||||||| |||||||| | || || |||||||||||||||||||| ||| || || | || ||||||||||||||||| || | ||| ||| | | |
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|
| T |
2563432 |
ctaggagactatgggaggatagacaatttggatgaagtatcacttggtttccaacgagcaatcctagtggtgtttgacatcaagaacagtgttatgatga |
2563333 |
T |
|
| Q |
136 |
atttgaaatctaaccaattttcaggtaaggtatcgaaagattgcaa |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2563332 |
atttgaaatctaaccaattttcaggtaaggagacgaaagattgcaa |
2563287 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 164
Target Start/End: Complemental strand, 16365293 - 16365156
Alignment:
| Q |
27 |
cgcataactctaggagaccatgggaggctggataacttggatgaagtatcacttgggttctgaccagtgaaccctgtggtgtttgacatcaataataatg |
126 |
Q |
| |
|
||||| || ||| ||||| ||||||| ||||| |||||||||| |||||||||||| | ||||| || ||||| ||||||||||||||||| || | || |
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|
| T |
16365293 |
cgcattaccctatgagactatgggagactggacaacttggatggagtatcacttggttgctgactagcaaacccggtggtgtttgacatcaagaacagtg |
16365194 |
T |
|
| Q |
127 |
tcatgcttaatttgaaatctaaccaattttcaggtaag |
164 |
Q |
| |
|
| ||| | ||| | |||||||||||||||||||||||| |
|
|
| T |
16365193 |
ttatgatgaatctcaaatctaaccaattttcaggtaag |
16365156 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 157
Target Start/End: Complemental strand, 11934791 - 11934660
Alignment:
| Q |
26 |
tcgcataactctaggagaccatgggaggctggataacttggatgaagtatcacttgggttctgaccagtgaaccctgtggtgtttgacatcaataataat |
125 |
Q |
| |
|
|||||| |||||||||||| ||| ||||||| | |||||||| |||||||||||||| | | ||||| |||| |||||||||||||||| || ||| |
|
|
| T |
11934791 |
tcgcattactctaggagactatgagaggctgaacaacttggaggaagtatcacttggttcccaaccagcaaaccagatggtgtttgacatcaagaacaat |
11934692 |
T |
|
| Q |
126 |
gtcatgcttaatttgaaatctaaccaattttc |
157 |
Q |
| |
|
|| ||| | |||||||| |||||||||||||| |
|
|
| T |
11934691 |
gttatgatgaatttgaagtctaaccaattttc |
11934660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 10589363 - 10589316
Alignment:
| Q |
40 |
gagaccatgggaggctggataacttggatgaagtatcacttgggttct |
87 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
10589363 |
gagactatgggaggctggaaaacttggatgaagtatctcttgggttct |
10589316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0085 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 8232 - 8062
Alignment:
| Q |
18 |
gaaaatcctcgcataactctaggagaccatgggaggctggataacttggatgaagtatcacttgggttctgaccagtgaaccctgtggtgtttgacatca |
117 |
Q |
| |
|
||||||||||||||| || | ||||| ||| ||||||||||||||||||||||||||| ||| ||||| | || ||||||| ||||| ||||||| |
|
|
| T |
8232 |
gaaaatcctcgcatatctagaagagactatgtgaggctggataacttggatgaagtatctctttggttc-caacatgctaccctgtagtgttcgacatca |
8134 |
T |
|
| Q |
118 |
ataataatgtcatgcttaatttgaaatctaaccaattttcaggtaaggtatcgaaagattgcaatgttcacttg |
191 |
Q |
| |
|
| || | || ||| ||||||||||||||||||||||||||| ||| ||| |||||||||||| ||||||| |
|
|
| T |
8133 |
agaacagcgtgatgattaatttgaaatctaaccaattttcagctaa--aatcagaagattgcaatgctcacttg |
8062 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 15465969 - 15465887
Alignment:
| Q |
33 |
actctaggagaccatgggaggctggataacttggatgaagtatcacttgggttctgaccagtgaaccctgtggtgtttgacat |
115 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||| ||||||| |
|
|
| T |
15465969 |
actctaggagactatgggaggctggataacttggaagaagtatcacttgggtttaaaccagcaaacccggtggtgcttgacat |
15465887 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 191
Target Start/End: Complemental strand, 21838822 - 21838764
Alignment:
| Q |
133 |
ttaatttgaaatctaaccaattttcaggtaaggtatcgaaagattgcaatgttcacttg |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | | ||||| |||||||||||||| |
|
|
| T |
21838822 |
ttaatttgaaatctaaccaattttcaggtaaggagttggaagatcgcaatgttcacttg |
21838764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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